Stardog 1.1 stopped working for me

László Török

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Feb 26, 2013, 2:09:22 PM2/26/13

to sta...@clarkparsia.com

Hi,

I had a running Stardog 1.1.3 on my machine and it now won't start.

com.google.inject.ProvisionException: Guice provision errors:

1) Error injecting constructor, java.lang.AssertionError: 2!=0

at com.clarkparsia.stardog.StardogKernel.<init>(Unknown Source)

at com.clarkparsia.stardog.StardogKernel.class(Unknown Source)

while locating com.clarkparsia.stardog.StardogKernel

1 error

What might be the issue?

Thanks,

Laszlo

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László Török

Mike Grove

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Feb 26, 2013, 2:26:09 PM2/26/13

to stardog

It's hard to say with an incomplete stack trace and no information about what you changed.

A likely issue would be something related to the classpath; Guice cannot find one of the dependencies of the kernel and is not able to initialize it and therefore start the server.

Cheers,

Mike

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László Török

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László Török

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Feb 26, 2013, 2:31:45 PM2/26/13

to Stardog

Problem solved.
It seems that the db was left in an inconsistent state after my computer crashed. Deleting the db seems to have fixed the issue.

Sent from my phone

Mike Grove

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Feb 26, 2013, 2:37:39 PM2/26/13

to stardog

On Tue, Feb 26, 2013 at 2:31 PM, László Török <ltor...@gmail.com> wrote:

Problem solved.
It seems that the db was left in an inconsistent state after my computer crashed. Deleting the db seems to have fixed the issue.

Which database was messed up, and were you writing to it when the computer crashed?

Cheers,

Mike

Sent from my phone

On Feb 26, 2013 8:09 PM, "László Török" <ltor...@gmail.com> wrote:
Hi,

I had a running Stardog 1.1.3 on my machine and it now won't start.

com.google.inject.ProvisionException: Guice provision errors:

1) Error injecting constructor, java.lang.AssertionError: 2!=0

at com.clarkparsia.stardog.StardogKernel.<init>(Unknown Source)
at com.clarkparsia.stardog.StardogKernel.class(Unknown Source)
while locating com.clarkparsia.stardog.StardogKernel

1 error

What might be the issue?

Thanks,

Laszlo

--
László Török

László Török

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Feb 26, 2013, 2:47:14 PM2/26/13

to Stardog

I'm afraid I can't tell. I had two test databases with a few thousand triples.
I was not writing any of them, I had to restart my computer without properly shutting down stardog for another reason.
Laszlo

Sent from my phone

Mike Grove

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Feb 26, 2013, 2:48:41 PM2/26/13

to stardog

Do you have the original problematic database(s) still available? I'd like to look at the index and try to diagnose what could have happened.

Thanks.

Mike

ehsan....@gmail.com

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Dec 28, 2013, 7:52:45 AM12/28/13

to sta...@clarkparsia.com

I've had the same problem, my computer crashed and stardom is not starting. Here's the stack:

Guice provision errors:

1) Error injecting constructor, com.complexible.stardog.security.StardogSecurityException: Error initializing the security index.

at com.complexible.stardog.security.shiro.StardogRealmURI.<init>(StardogRealmURI.java:96)

at com.complexible.stardog.security.shiro.StardogRealmURI.class(StardogRealmURI.java:96)

while locating com.complexible.stardog.security.shiro.StardogRealmURI

at com.complexible.stardog.security.index.SecurityModule.configure(SecurityModule.java:91)

while locating org.apache.shiro.realm.Realm

for parameter 1 at com.complexible.stardog.StardogKernel.<init>(StardogKernel.java:195)

at com.complexible.stardog.StardogKernel.class(StardogKernel.java:195)

while locating com.complexible.stardog.StardogKernel

Caused by: com.complexible.stardog.security.StardogSecurityException: Error initializing the security index.

at com.complexible.stardog.security.shiro.StardogRealmURI.createIndexForTheFirstTime(StardogRealmURI.java:319)

at com.complexible.stardog.security.shiro.StardogRealmURI.initializeSecurityIndex(StardogRealmURI.java:244)

at com.complexible.stardog.security.shiro.StardogRealmURI.<init>(StardogRealmURI.java:109)

at com.complexible.stardog.security.shiro.StardogRealmURI.<init>(StardogRealmURI.java:96)

at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)

at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)

at java.lang.reflect.Constructor.newInstance(Constructor.java:513)

at com.google.inject.internal.DefaultConstructionProxyFactory$2.newInstance(DefaultConstructionProxyFactory.java:85)

at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)

at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:254)

at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)

at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1031)

at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)

at com.google.inject.Scopes$1$1.get(Scopes.java:65)

at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:40)

at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:54)

at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)

at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1031)

at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)

at com.google.inject.Scopes$1$1.get(Scopes.java:65)

at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:40)

at com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)

at com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)

at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:84)

at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:254)

at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)

at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1031)

at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)

at com.google.inject.Scopes$1$1.get(Scopes.java:65)

at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:40)

at com.google.inject.internal.InjectorImpl$4$1.call(InjectorImpl.java:978)

at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1024)

at com.google.inject.internal.InjectorImpl$4.get(InjectorImpl.java:974)

at com.complexible.stardog.protocols.server.StardogServer.start(StardogServer.java:80)

at com.complexible.stardog.cli.impl.ServerStart.call(ServerStart.java:135)

at com.complexible.stardog.cli.impl.ServerStart.call(ServerStart.java:42)

at com.complexible.stardog.cli.CLIBase.execute(CLIBase.java:55)

at com.complexible.stardog.cli.admin.CLI.main(CLI.java:230)

Caused by: com.complexible.stardog.security.PersistenceManagerException: Inconsistent index size: 662 != 661

at com.complexible.stardog.security.shiro.StardogRealmURI.createIndexForTheFirstTime(StardogRealmURI.java:282)

... 38 more

Caused by: com.complexible.stardog.index.IndexException: Inconsistent index size: 662 != 661

at com.complexible.stardog.index.AbstractIndexData.verifySizes(AbstractIndexData.java:231)

at com.complexible.stardog.index.AbstractIndexData.update(AbstractIndexData.java:286)

at com.complexible.stardog.index.SingletonIndexData.updateDirect(SingletonIndexData.java:78)

at com.complexible.stardog.index.SingletonIndexData.update(SingletonIndexData.java:73)

at com.complexible.stardog.index.IndexWriterImpl.prepare(IndexWriterImpl.java:160)

at com.complexible.stardog.index.IndexWriterImpl.commit(IndexWriterImpl.java:175)

at com.complexible.stardog.security.shiro.StardogRealmURI.createIndexForTheFirstTime(StardogRealmURI.java:279)

... 38 more

2) Error injecting constructor, java.lang.NullPointerException

at com.complexible.stardog.security.shiro.StardogRealmURI.<init>(StardogRealmURI.java:96)

at com.complexible.stardog.security.shiro.StardogRealmURI.class(StardogRealmURI.java:96)

while locating com.complexible.stardog.security.shiro.StardogRealmURI

for parameter 3 at com.complexible.stardog.security.impl.SecureSystemSecurityManagerImpl.<init>(SecureSystemSecurityManagerImpl.java:81)

while locating com.complexible.stardog.security.impl.SecureSystemSecurityManagerImpl

at com.complexible.stardog.security.index.SecurityModule.configure(SecurityModule.java:97)

while locating com.complexible.stardog.security.SecureSystemSecurityManager<org.openrdf.model.URI>

for parameter 0 at com.complexible.stardog.security.impl.StardogSecurityManagerImpl.<init>(StardogSecurityManagerImpl.java:76)

while locating com.complexible.stardog.security.impl.StardogSecurityManagerImpl

at com.complexible.stardog.security.index.SecurityModule.configure(SecurityModule.java:99)

while locating com.complexible.stardog.security.StardogSecurityManager

for parameter 5 at com.complexible.stardog.StardogKernel.<init>(StardogKernel.java:195)

at com.complexible.stardog.StardogKernel.class(StardogKernel.java:195)

while locating com.complexible.stardog.StardogKernel

Caused by: java.lang.NullPointerException

at com.complexible.stardog.index.disk.btree.impl.BPlusTreeImpl.getStartPageID(BPlusTreeImpl.java:448)

at com.complexible.stardog.index.disk.btree.impl.BPlusTreeImpl.iterator(BPlusTreeImpl.java:558)

at com.complexible.stardog.index.disk.btree.impl.BPlusTreeImpl.iterator(BPlusTreeImpl.java:442)

at com.complexible.stardog.index.AbstractNaryIndex.iterator(AbstractNaryIndex.java:79)

at com.complexible.stardog.index.IteratorBuilder$ContextFirstTernaryBuilder.build(IteratorBuilder.java:655)

at com.complexible.stardog.index.IteratorBuilder.iterator(IteratorBuilder.java:183)

at com.complexible.stardog.security.shiro.StardogRealmURI.getSecurityIndexVersion(StardogRealmURI.java:342)

at com.complexible.stardog.security.shiro.StardogRealmURI.initializeSecurityIndex(StardogRealmURI.java:243)