Hi, I'm an undergrad working with Michal Galdzicki on the Synthetic Biology Open Language. I think I found a bug in StarDog--or maybe Java. I put together a demo of the problem, and we've reproduced it on my laptop and a server so far. Here's some info about them:
Ubuntu 11.04
"java-6-sun-1.6.0.26"
java version "1.6.0_26"
Java(TM) SE Runtime Environment (build 1.6.0_26-b03)
Java HotSpot(TM) 64-Bit Server VM (build 20.1-b02, mixed mode)
Xubuntu 12.04
java version "1.6.0_24"
OpenJDK Runtime Environment (IcedTea6 1.11.1) (6b24-1.11.1-4ubuntu3)
OpenJDK 64-Bit Server VM (build 20.0-b12, mixed mode)
My test setup is slightly too big to email, so I put it up on the website:
http://sbpkb2.sbols.org/crashtest.zipDoes the same thing crash at your end? It seems obscure with the spaces, but also shows up when I try to build up a complicated query and I've commented out parts of it.
Thanks
Jeff