Hi Dorian,
The main advantages of Zucchini over Courgette are (compressed) patch size, patch-application memory, and modernity. In terms of patch generation, Zucchini isn't significantly faster than Courgette.
Both Courgette and Zucchini are command line tools, so perhaps you can compare their speeds by direct timing? Note that these tools are unsuitable for real-time applications
Meanwhile, Zucchini-gen has a -raw setting that should be a bit faster (but offers worse patch size) if you're patching binary formats that Zucchini understands (e.g., {PE, ELF, DEX} files).
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Samuel Huang