bioinformatics pipeline for TCGA DLBC

['Sinkoe, Andrew (NIH/NCI) [F]' via gdac]

Hi,

 

I’m having a hard time finding information about the specific bioinformatics tools that were used for generating the mutation data and RNA-seq expression data in the TCGA DLBC study, which are available in the GDAC Firehose. Could you please direct me as to how to best find this information? For example, I’m trying to determine which software program, e.g., MuTect, SomaticSniper, or other, was used for generating the MAF files in GDAC Firehose for TCGA DLBC. Thanks so much,

 

Andrew Sinkoe, PhD

Postdoctoral Fellow

National Cancer Institute