Single Cell and Spatial Omics

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Welcome to the Australian BioCommons Single Cell and Spatial Omics Community Group

This group is for any Australian researcher undertaking (or interested in undertaking) Single Cell and Spatial Omics across any taxa (or their International collaborators), who wishes to

discuss Single Cell and Spatial Omics analysis tools and pipelines with the group
receive email updates or meeting invites on shared national infrastructure that is being deploying to support Single Cell and Spatial Omics analysis
influence how that infrastructure is developed so it is support their research

NOTE: To post messages to the group, you will need a google account (or link a non-Gmail email address to an existing Google Account). More info

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The BioCommons’ aim is to engage Australian bioscience researchers as inclusively and widely as possible, and we value the involvement of everyone in this community and are committed to creating a friendly and respectful place for learning, training, sharing experiences, and contributing. As such, it is expected that all group members act in accordance with the Australian BioCommons Code of Conduct

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Tiffanie Nelson

Mar 19

Watch the recent Single Cell & Spatial Omics Community Meeting recording

Dear all, I hope this email finds you well. It was great to see many of you at our recent Single Cell

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Watch the recent Single Cell & Spatial Omics Community Meeting recording

Dear all, I hope this email finds you well. It was great to see many of you at our recent Single Cell

Mar 19

Tiffanie Nelson

Mar 4

Join us TODAY at the next Single Cell and Spatial Omics Meeting | Tues 5th March 13:00 AEDT

Dear all, Please note that the next meeting for the Single Cell and Spatial Omics Community is

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Join us TODAY at the next Single Cell and Spatial Omics Meeting | Tues 5th March 13:00 AEDT

Dear all, Please note that the next meeting for the Single Cell and Spatial Omics Community is

Mar 4

Feb 25

Last chance to have your say: What bioinformatics skills do Australians need?

Good morning everyone, Have you had your say in the The National Bioinformatics Training

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Last chance to have your say: What bioinformatics skills do Australians need?

Good morning everyone, Have you had your say in the The National Bioinformatics Training

Feb 25

Tiffanie Nelson

Feb 12

Join us at the next Single Cell and Spatial Omics Meeting | Tues 5th March 13:00 AEDT

Dear all, I hope this email finds you well. We had a successful Single Cell and Spatial Omics Meeting

unread,

Join us at the next Single Cell and Spatial Omics Meeting | Tues 5th March 13:00 AEDT

Dear all, I hope this email finds you well. We had a successful Single Cell and Spatial Omics Meeting

Feb 12

Tiffanie Nelson

Feb 8

SupercomputingAsia 2024 Life Sciences day

Hi all, Please see below an opportunity: We want to let you know about a special offer that has been

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SupercomputingAsia 2024 Life Sciences day

Hi all, Please see below an opportunity: We want to let you know about a special offer that has been

Feb 8

Tiffanie Nelson

Jan 24

Fwd: [SIB-courses] Single-cell Transcriptomics with R, 18-20 March 2024, Bern

Dear all, Happy new year. The course below may be of interest to some of you. Regards, Tiff Dear All,

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Fwd: [SIB-courses] Single-cell Transcriptomics with R, 18-20 March 2024, Bern

Dear all, Happy new year. The course below may be of interest to some of you. Regards, Tiff Dear All,

Jan 24

Tiffanie Nelson

12/14/23

What bioinformatics training do YOU need to improve your research?

Dear colleagues, What bioinformatics training do YOU need to improve your research? What's

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What bioinformatics training do YOU need to improve your research?

Dear colleagues, What bioinformatics training do YOU need to improve your research? What's

12/14/23

Tiffanie Nelson

12/11/23

Join us at tomorrow, 13th Dec, at the Single Cell and Spatial Omics Community Meeting 14:00 AEDT

Dear all, We are starting up Single Cell and Spatial Omics Community Meetings to provide a forum for

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Join us at tomorrow, 13th Dec, at the Single Cell and Spatial Omics Community Meeting 14:00 AEDT

Dear all, We are starting up Single Cell and Spatial Omics Community Meetings to provide a forum for

12/11/23

Tiffanie Nelson

11/30/23

Join us at the Single Cell and Spatial Omics Community Meeting 13th Dec 14:00 AEDT

Dear all, We are starting up Single Cell and Spatial Omics Community Meetings to provide a forum for

unread,

Join us at the Single Cell and Spatial Omics Community Meeting 13th Dec 14:00 AEDT

Dear all, We are starting up Single Cell and Spatial Omics Community Meetings to provide a forum for

11/30/23

Tiffanie Nelson

10/12/23

Student Research Grant Opportunity with Genetics Society of AustralAsia

Hi all, Please see below an opportunity for two student research grants for sequencing and library

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Student Research Grant Opportunity with Genetics Society of AustralAsia

Hi all, Please see below an opportunity for two student research grants for sequencing and library

10/12/23

8/23/23

BioCommons workshop: Single Cell RNAseq Analysis in R

Hi all, The BioCommons together with QCIF, Monash Genomics and Bioinformatics Platform and the

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BioCommons workshop: Single Cell RNAseq Analysis in R

Hi all, The BioCommons together with QCIF, Monash Genomics and Bioinformatics Platform and the

8/23/23

Jeff Christiansen

7/27/23

WORKSHOP: Single cell RNAseq analysis in R - September 2023

Hi All, See link below for details of an upcoming national scRNA-seq workshop (using Seurat) being

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WORKSHOP: Single cell RNAseq analysis in R - September 2023

Hi All, See link below for details of an upcoming national scRNA-seq workshop (using Seurat) being

7/27/23

Tiffanie Nelson

6/19/23

Single-cell omics training survey and online materials

Dear colleagues, The workshop for single cell trainers that was run in March 2023 in Switzerland and

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Single-cell omics training survey and online materials

Dear colleagues, The workshop for single cell trainers that was run in March 2023 in Switzerland and

6/19/23

Tiffanie Nelson

4/3/23

BioChats tomorrow 4th April 12 noon AEST: BLAST and other underappreciated workhorses of bioinformatics

Dear all, Please join us tomorrow for the April BioChats on Zoom, Tuesday 4th April at 12 noon AEST

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BioChats tomorrow 4th April 12 noon AEST: BLAST and other underappreciated workhorses of bioinformatics

Dear all, Please join us tomorrow for the April BioChats on Zoom, Tuesday 4th April at 12 noon AEST

4/3/23

Tiffanie Nelson

3/7/23

Single Cell Omics Hybrid Workshop in Europe and Online 21-23 March 2023

Dear all, Our colleagues at ELIXIR , the European life sciences research infrastructure collaboration

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Single Cell Omics Hybrid Workshop in Europe and Online 21-23 March 2023

Dear all, Our colleagues at ELIXIR , the European life sciences research infrastructure collaboration

3/7/23

Tiffanie Nelson

3/6/23

Hear from Dr Cameron Hyde at the March BioChats TODAY 12 noon AEDT

Hello all, Please join us at BioChats today (Tuesday March 7) at 12 noon AEDT. Come along to hear

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Hear from Dr Cameron Hyde at the March BioChats TODAY 12 noon AEDT

Hello all, Please join us at BioChats today (Tuesday March 7) at 12 noon AEDT. Come along to hear

3/6/23

Tiffanie Nelson

2/6/23

BioChats 7th Feb :: Supporting life scientists in doing their best research with bioinformatics

Please join us for our first BioChat for 2023! It's on tomorrow, Tuesday, 7th Feb at 12 pm AEDT /

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BioChats 7th Feb :: Supporting life scientists in doing their best research with bioinformatics

Please join us for our first BioChat for 2023! It's on tomorrow, Tuesday, 7th Feb at 12 pm AEDT /

2/6/23

Tiffanie Nelson

1/19/23

Seeking Feedback on Data Repository Infrastructure Needs

Dear colleagues, please see the email below regarding data in international repositories. Please help

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Seeking Feedback on Data Repository Infrastructure Needs

Dear colleagues, please see the email below regarding data in international repositories. Please help

1/19/23

Tiffanie Nelson

10/31/22

BioChats today on RNAseq tool, RNASum

Join us at BioChats today (Tues. 1/11) to hear from Dr Sehrish Kanwal @Dr_Sehrish_K from University

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BioChats today on RNAseq tool, RNASum

Join us at BioChats today (Tues. 1/11) to hear from Dr Sehrish Kanwal @Dr_Sehrish_K from University

10/31/22

Johan Gustafsson

9/15/22

Reminder: Multi Omics Community Kick Off Meeting

Dear all We look forward to discussing infrastructure challenges in the Multi Omics Community Kick

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Reminder: Multi Omics Community Kick Off Meeting

Dear all We look forward to discussing infrastructure challenges in the Multi Omics Community Kick

9/15/22

Tiffanie Nelson

8/31/22

Multi-omics survey responses needed

Dear friends, If you are working on multi-omics datasets or multiple 'omics technologies, please

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Multi-omics survey responses needed

Dear friends, If you are working on multi-omics datasets or multiple 'omics technologies, please

8/31/22

Tiffanie Nelson

7/21/22

Invitation to survey: Infrastructure to support Multi-omics analyses

Dear colleague, I hope this email finds you well. The Australian BioCommons are seeking input from

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Invitation to survey: Infrastructure to support Multi-omics analyses

Dear colleague, I hope this email finds you well. The Australian BioCommons are seeking input from

7/21/22

6/27/22

BioCommons workshop: Single Cell RNAseq Analysis in R

Hi all, You may have already seen this posted elsewhere. We want to ensure our entire community is

unread,

BioCommons workshop: Single Cell RNAseq Analysis in R

Hi all, You may have already seen this posted elsewhere. We want to ensure our entire community is

6/27/22

Tiffanie Nelson

3/29/22

Single Cell 'Omics Community Meeting Minutes

Hi all, The Single Cell 'Omics Community Meeting was held on Thursday 3/3/2022 and the minutes of

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Single Cell 'Omics Community Meeting Minutes

Hi all, The Single Cell 'Omics Community Meeting was held on Thursday 3/3/2022 and the minutes of

3/29/22

Tiffanie Nelson

3/28/22

FW: Upcoming events: Ethics of genomics data; R fundamentals for Biologists, and BioChats

Hi all, We have a few exciting events coming up in the BioCommons that I'd like to share with you

unread,

FW: Upcoming events: Ethics of genomics data; R fundamentals for Biologists, and BioChats

Hi all, We have a few exciting events coming up in the BioCommons that I'd like to share with you

3/28/22

Jeff Christiansen

3/10/22

Apply Now: Chan Zuckerberg Essential Open Source Software for Science (Cycle 5)

Hi All, For anyone who is interested there is a 5th RFA open by CZI around Open software for

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Apply Now: Chan Zuckerberg Essential Open Source Software for Science (Cycle 5)

Hi All, For anyone who is interested there is a 5th RFA open by CZI around Open software for

3/10/22

Tiffanie Nelson

3/2/22

Happening today: Single Cell 'Omics Community Kick-off Meeting 4th March 12 noon AEDT

Hi all, After a few postponements, today we will be holding the single cell 'omics community

unread,

Happening today: Single Cell 'Omics Community Kick-off Meeting 4th March 12 noon AEDT

Hi all, After a few postponements, today we will be holding the single cell 'omics community

3/2/22

2/22/22

Postponed: Single Cell 'Omics Community Meeting Kick Off

Good morning all, As you may have already seen, the Single Cell 'Omics Community Meeting Kick Off

unread,

Postponed: Single Cell 'Omics Community Meeting Kick Off

Good morning all, As you may have already seen, the Single Cell 'Omics Community Meeting Kick Off

2/22/22

Johan Gustafsson

2/3/22

Bioinformatics Workflows Community

Hi all **Apologies for cross-posting** The Australian BioCommons would like to invite you to a

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Bioinformatics Workflows Community

Hi all **Apologies for cross-posting** The Australian BioCommons would like to invite you to a

2/3/22

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