Fwd: Webinar: Functional and Taxonomic Profiling of MAGs

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Jeff Christiansen

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Jul 1, 2021, 6:50:24 PM7/1/21
to Microbiome Analysis
Hi All,
This may be of interest. 
The time is terrible for us in Australia, but it will be recorded and uploaded to KBase's YouTube channel https://www.youtube.com/DOEKBase
Cheers
Jeff


---------- Forwarded message ---------
From: KBase <communi...@kbase.us>
Date: Fri, 2 Jul 2021 at 00:19
Subject: Webinar: Functional and Taxonomic Profiling of MAGs


Characterize the genetic content of your metagenome-assembled genomes
Webinar: Functional and Taxonomic Profiling of Metagenome-assembled Genomes
July 7, 1pm ET/10am PT
Anni Zhang, Lawrence Berkeley National Lab
John-Marc Chandonia, Lawrence Berkeley National Lab
Alexey Kazakov, Lawrence Berkeley National Lab
 

KBase's collection of tools for analyzing microbial ecosystems data is growing with new apps developed through support by the Department of Energy's Science Focus Area (SFA) program. Join this webinar to learn about two apps for taxonomic and functional profiling of metagenome-assembled genomes - Fama and Strainfinder - built by researchers with the Ecosystems and Networks Integrated with Genes and Molecular Assemblies SFA (ENIGMA).

 

Fama examines the genetic potential of a microbial community and the taxonomy of functional genes by direct mapping of individual sequence reads to a curated reference set of proteins.

 

StrainFinder assigns strain genotypes and assesses strain frequencies for subpopulations of microbial communities with maximum likelihood estimates based on allele frequencies.

 

Register for the webinar to learn about using these microbial communities tools and more!

WHAT IS KBASE?

The Department of Energy Systems Biology Knowledgebase is a knowledge creation and discovery environment designed for both biologists and bioinformaticians.

FREE TO USE

KBase is a open-source data-science research platform funded by the US Department of Energy for public use
APPS FOR ANALYSIS

Over 200 apps for comparative genomics, communities analysis, metabolic modeling, and transcriptomics
DATA DRIVEN DISCOVERY

Maximize the impact of your data with tools designed to enable analysis in the context of rich public repositories
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--

 Jeff Christiansen, PhD 


 Associate Director - Engagements and Operations

 Australian BioCommons

 Axon Building 47, University of Queensland

 St Lucia .  Brisbane .  QLD .  4072

 M: +61 (0) 468 740 880

 W: biocommons.org.au


  This position is funded by Bioplatforms Australia and hosted at QCIF and RCC at the University of Queensland

 

 

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