Hello Mark,
I know it's probably way to late for a reply, but I came across a similar issue.
It looks like you have almost everything good to go, the only thing you're missing is declaring your custom servlet in the META-INF/spring.factories file, like below:
org.springframework.boot.autoconfigure.EnableAutoConfiguration=\
com.example.CustomConfig1,\
com.example.CustomConfig2,\
uk.ac.bris.adt.StripRenewFilter
Regards,
Julio