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Zorro - The masked assembler

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Taj Azarian, Gustavo Lacerda3

8/17/15

Output files and post-processing before scaffolding

Gustavo, This is tremendously helpful. Also, I should have provided some background. I have two de

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Output files and post-processing before scaffolding

Gustavo, This is tremendously helpful. Also, I should have provided some background. I have two de

8/17/15

5/27/13

Is this forum dead? No answers to questions....

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Is this forum dead? No answers to questions....

5/27/13

5/18/13

old version MUMmer 3.06 needed for Zorro - where to find it?

Hi All, Zorro is tested with MUMmer 3.06 and is apparently looking for some old Mummer scripts. Where

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old version MUMmer 3.06 needed for Zorro - where to find it?

Hi All, Zorro is tested with MUMmer 3.06 and is apparently looking for some old Mummer scripts. Where

5/18/13

Juliane, Erik Lysøe2

5/16/13

zorro fails on opening amos bank/ missing file zorro.REPASSEMBLY.bnk/RED.ifo

Hi I have exactly the same problem, could not open bank for reading. Anybody? Cheers Erik kl. 15:46:

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zorro fails on opening amos bank/ missing file zorro.REPASSEMBLY.bnk/RED.ifo

Hi I have exactly the same problem, could not open bank for reading. Anybody? Cheers Erik kl. 15:46:

5/16/13

Texier Frédéric

1/30/13

Probem with Zorro

Hello, I am trying to use zorro with an assembly of 454 reads with Newbler and an asembly of Hiseq

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Probem with Zorro

Hello, I am trying to use zorro with an assembly of 454 reads with Newbler and an asembly of Hiseq

1/30/13

11/26/12

Hi, from all the file create by Zorro, I didn't find a file describing the relation between the

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Hi, from all the file create by Zorro, I didn't find a file describing the relation between the

11/26/12

Amir M. Zadeh, Gustavo Lacerda2

7/19/12

Hi Amir, Zorro singlets, per definition, are contigs (either from assembly1 or assembly2) that could

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Hi Amir, Zorro singlets, per definition, are contigs (either from assembly1 or assembly2) that could

7/19/12

6/15/12

is it possible to use Zorro also for transcriptome assemblies like ABySS merge.pl?

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is it possible to use Zorro also for transcriptome assemblies like ABySS merge.pl?

6/15/12

4/26/12

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4/26/12

4/25/12

hiiiiiiiiiiiiiiii

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hiiiiiiiiiiiiiiii

4/25/12

Bastien Boussau, … Steve10

5/27/11

First attempt with Zorro: empty assembly. Because I used scaffolds instead of contigs?

Hi Bastien, What size files do you use with minimus2 and what kind of run times? Cheers, Stephen On

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First attempt with Zorro: empty assembly. Because I used scaffolds instead of contigs?

Hi Bastien, What size files do you use with minimus2 and what kind of run times? Cheers, Stephen On

5/27/11

Scott Geib, Nathaniel Street2

5/3/11

I can second this. I've now been waiting for over two weeks at the nucmer stage using zorro to

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I can second this. I've now been waiting for over two weeks at the nucmer stage using zorro to

5/3/11

Parit, Gustavo Lacerda2

4/14/11

Quick questions

Hi Paritt. Thank you for testing Zorro 1. Is there a limit/recommended range on the k-mer size ?

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Quick questions

Hi Paritt. Thank you for testing Zorro 1. Is there a limit/recommended range on the k-mer size ?

4/14/11

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