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Zorro - The masked assembler
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Taj Azarian
,
Gustavo Lacerda
3
8/17/15
Output files and post-processing before scaffolding
Gustavo, This is tremendously helpful. Also, I should have provided some background. I have two de
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Output files and post-processing before scaffolding
Gustavo, This is tremendously helpful. Also, I should have provided some background. I have two de
8/17/15
Erik Lysøe
5/27/13
Is this forum dead? No answers to questions....
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Is this forum dead? No answers to questions....
5/27/13
Lutz Froenicke
5/18/13
old version MUMmer 3.06 needed for Zorro - where to find it?
Hi All, Zorro is tested with MUMmer 3.06 and is apparently looking for some old Mummer scripts. Where
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old version MUMmer 3.06 needed for Zorro - where to find it?
Hi All, Zorro is tested with MUMmer 3.06 and is apparently looking for some old Mummer scripts. Where
5/18/13
Juliane
,
Erik Lysøe
2
5/16/13
zorro fails on opening amos bank/ missing file zorro.REPASSEMBLY.bnk/RED.ifo
Hi I have exactly the same problem, could not open bank for reading. Anybody? Cheers Erik kl. 15:46:
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zorro fails on opening amos bank/ missing file zorro.REPASSEMBLY.bnk/RED.ifo
Hi I have exactly the same problem, could not open bank for reading. Anybody? Cheers Erik kl. 15:46:
5/16/13
Texier Frédéric
1/30/13
Probem with Zorro
Hello, I am trying to use zorro with an assembly of 454 reads with Newbler and an asembly of Hiseq
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Probem with Zorro
Hello, I am trying to use zorro with an assembly of 454 reads with Newbler and an asembly of Hiseq
1/30/13
pascale
11/26/12
output
Hi, from all the file create by Zorro, I didn't find a file describing the relation between the
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output
Hi, from all the file create by Zorro, I didn't find a file describing the relation between the
11/26/12
Amir M. Zadeh
,
Gustavo Lacerda
2
7/19/12
Singlets
Hi Amir, Zorro singlets, per definition, are contigs (either from assembly1 or assembly2) that could
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Singlets
Hi Amir, Zorro singlets, per definition, are contigs (either from assembly1 or assembly2) that could
7/19/12
JC
6/15/12
Transcriptome
is it possible to use Zorro also for transcriptome assemblies like ABySS merge.pl?
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Transcriptome
is it possible to use Zorro also for transcriptome assemblies like ABySS merge.pl?
6/15/12
MISS SARA
4/26/12
Hello
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Hello
4/26/12
MISS SARA
4/25/12
hiiiiiiiiiiiiiiii
Hello
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hiiiiiiiiiiiiiiii
Hello
4/25/12
Bastien Boussau
, …
Steve
10
5/27/11
First attempt with Zorro: empty assembly. Because I used scaffolds instead of contigs?
Hi Bastien, What size files do you use with minimus2 and what kind of run times? Cheers, Stephen On
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First attempt with Zorro: empty assembly. Because I used scaffolds instead of contigs?
Hi Bastien, What size files do you use with minimus2 and what kind of run times? Cheers, Stephen On
5/27/11
Scott Geib
,
Nathaniel Street
2
5/3/11
Zorro Run time
I can second this. I've now been waiting for over two weeks at the nucmer stage using zorro to
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Zorro Run time
I can second this. I've now been waiting for over two weeks at the nucmer stage using zorro to
5/3/11
Parit
,
Gustavo Lacerda
2
4/14/11
Quick questions
Hi Paritt. Thank you for testing Zorro 1. Is there a limit/recommended range on the k-mer size ?
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Quick questions
Hi Paritt. Thank you for testing Zorro 1. Is there a limit/recommended range on the k-mer size ?
4/14/11
