I don't know exactly what I was doing wrong, because I was using Lockers (right now, I think I don't need 'Isolates' stuff) and my application crashed. Maybe, I had missed some 'v8::Locker locker' in a critical section. The thing is, now I can compile the javascript code in the main thread and call it from different threads (simply using Lockers).
However, I realized I need to compile the js code in a different thread because a long compilation or run can block the main process, but I am finding problems (doing the same way) to compile and run js code or even use v8 sintaxis in a thread that is not the main. When I know more accurately the source of the problem or the solution I'll write it here!