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UCSF EGAN
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GG
,
ucsf egan
2
4/17/16
Right click functionality not working
This bug appears to stem from users using one-button mice (ie Apple mice). The current workaround is
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Right click functionality not working
This bug appears to stem from users using one-button mice (ie Apple mice). The current workaround is
4/17/16
toma...@gmail.com
,
ucsf egan
2
9/8/15
regulation data for yeast
Hi, Absolutely. You'll have to make sure you have the regulation data in a specific file format.
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regulation data for yeast
Hi, Absolutely. You'll have to make sure you have the regulation data in a specific file format.
9/8/15
dS
,
ucsf egan
6
8/25/14
PermuSeed KS values : pValue / qValue?
Hi Dirk, PermuSEED values range between 0 and one, and are not log10. Jesse On Aug 21, 2014 11:54 AM,
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PermuSeed KS values : pValue / qValue?
Hi Dirk, PermuSEED values range between 0 and one, and are not log10. Jesse On Aug 21, 2014 11:54 AM,
8/25/14
GG
8/21/14
Egan launch fail; error: ava.io.FileNotFoundException
Hi, I'm trying to lauch Egan (human) for the first time on an iMac. I got the following error:
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Egan launch fail; error: ava.io.FileNotFoundException
Hi, I'm trying to lauch Egan (human) for the first time on an iMac. I got the following error:
8/21/14
mmfreidin
, …
ucsf egan
5
6/11/14
java error
Well this isn't the typical Java 7 problem. It likely has to do with the mapping file that you
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java error
Well this isn't the typical Java 7 problem. It likely has to do with the mapping file that you
6/11/14
dS
,
ucsf egan
5
2/18/14
Calculate ParaSeeds, PermuSeeds problem: grey'd out (EGAN 1.4; windows;java6)
Hi Jesse, thanks for the reply, the curious thing is: On a Mac the calculations are done after around
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Calculate ParaSeeds, PermuSeeds problem: grey'd out (EGAN 1.4; windows;java6)
Hi Jesse, thanks for the reply, the curious thing is: On a Mac the calculations are done after around
2/18/14
ucsf egan
,
christoph...@ucsf.edu
5
2/13/14
EGAN hangs, crashes or doesn't start
Hi Christopher, This is a known issue between EGAN and Java 7 and will be fixed soon. In the meantime
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EGAN hangs, crashes or doesn't start
Hi Christopher, This is a known issue between EGAN and Java 7 and will be fixed soon. In the meantime
2/13/14
hnsa...@gmail.com
, …
ucsf egan
8
2/11/14
Enrichment p-values
I would try them both, although I've been having problems with them recently. Please let me know
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Enrichment p-values
I would try them both, although I've been having problems with them recently. Please let me know
2/11/14
alex padron
,
ucsf egan
4
2/5/14
limiting network interactions to local data
Hi Alex, Sorry for the delay. If you want accurate enrichment p-values, then you need to use the
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limiting network interactions to local data
Hi Alex, Sorry for the delay. If you want accurate enrichment p-values, then you need to use the
2/5/14
ucsf egan
, …
rlju...@gmail.com
16
1/10/14
A very common EGAN exception due to Java 7 (1.7)
Hey Rob, This workaround works for me... http://support.apple.com/kb/ht5559 Jesse On Thu, Jan 9, 2014
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A very common EGAN exception due to Java 7 (1.7)
Hey Rob, This workaround works for me... http://support.apple.com/kb/ht5559 Jesse On Thu, Jan 9, 2014
1/10/14
mmfreidin
,
ucsf egan
4
1/10/14
JAVA ERROR
Sorry about that - there's a bug with EGAN for Java 7. I anticipate that this will be fixed soon.
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JAVA ERROR
Sorry about that - there's a bug with EGAN for Java 7. I anticipate that this will be fixed soon.
1/10/14
manu tiwari
,
ucsf egan
2
12/13/13
gene list attributes not loading
Hi Manu, Do you have a header row as the first line in your tab-delimited file? Are you making sure
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gene list attributes not loading
Hi Manu, Do you have a header row as the first line in your tab-delimited file? Are you making sure
12/13/13
hnsaghire
,
ucsf egan
3
5/29/13
Gene sets databases
For example, what genes are in the WNT Pathway? http://akt.ucsf.edu/EGAN/images/screenshots/
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Gene sets databases
For example, what genes are in the WNT Pathway? http://akt.ucsf.edu/EGAN/images/screenshots/
5/29/13
ychi...@gmail.com
, …
nsl
5
5/28/13
Format of a background file
Hi, I ran into the same problem with regard to uploading a background file. Did Jesse's
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Format of a background file
Hi, I ran into the same problem with regard to uploading a background file. Did Jesse's
5/28/13
toral...@gmail.com
,
ucsf egan
2
5/15/13
Reagrding Gene network of Differentially expressed genes
Hello, Thanks for posting. Have you followed the load experiment tutorial? http://akt.ucsf.edu/EGAN/
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Reagrding Gene network of Differentially expressed genes
Hello, Thanks for posting. Have you followed the load experiment tutorial? http://akt.ucsf.edu/EGAN/
5/15/13
Arundhati Bakshi
,
ucsf egan
2
3/28/13
Change node border colors
Hello, The node border colors can only be derived from one experiment at a time. To view values from
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Change node border colors
Hello, The node border colors can only be derived from one experiment at a time. To view values from
3/28/13
ychi...@gmail.com
,
ucsf egan
2
3/12/13
local type definition file
Hello, The error message that you're posting is what results from an invalid type_definitions
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local type definition file
Hello, The error message that you're posting is what results from an invalid type_definitions
3/12/13
nsl
,
ucsf egan
4
11/27/12
loading experimental data
Just to follow up, this issue was resolved by using a custom mapping file that contained FlyBase IDs
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loading experimental data
Just to follow up, this issue was resolved by using a custom mapping file that contained FlyBase IDs
11/27/12
roelq
,
ucsf egan
2
6/29/12
Questions about EGAN
Hi Roel, I hope the answers in my reply to your other post will suffice. Please post again if there
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Questions about EGAN
Hi Roel, I hope the answers in my reply to your other post will suffice. Please post again if there
6/29/12
roelq
,
ucsf egan
2
6/29/12
Node color
Hi Roel, Here are answers to your questions: - It is not a great idea to use multiple colors in a
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Node color
Hi Roel, Here are answers to your questions: - It is not a great idea to use multiple colors in a
6/29/12
Rebecca Baillie
,
ucsf egan
8
6/5/12
Data input
You're welcome. Also I forgot to mention that EGAN readily accepts custom mapping files for ID
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Data input
You're welcome. Also I forgot to mention that EGAN readily accepts custom mapping files for ID
6/5/12
LEP
,
ucsf egan
2
6/2/12
How to kill orphaned Entrez Genes from being displayed
Yes. Take a look at the gray 'H' menu to the left of the Network View. There you can hide
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How to kill orphaned Entrez Genes from being displayed
Yes. Take a look at the gray 'H' menu to the left of the Network View. There you can hide
6/2/12
Fernanda Waltenberg
,
ucsf egan
2
5/2/12
EGAN for O.sativa RNA Seq
Hi Fernanda, Thanks for posting. Can you email me (instead of posting to the group) the first few
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EGAN for O.sativa RNA Seq
Hi Fernanda, Thanks for posting. Can you email me (instead of posting to the group) the first few
5/2/12
nsl
3/11/12
New Data sets and ID column
Hi all, I am sorry to ask such a basic question but I am new to all of this and find EGAN the most
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New Data sets and ID column
Hi all, I am sorry to ask such a basic question but I am new to all of this and find EGAN the most
3/11/12
rashi parihar
,
ucsf egan
6
3/1/12
query
Thanx once again!!as u have told that Using a homology bridge - experiment data for organisms that
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query
Thanx once again!!as u have told that Using a homology bridge - experiment data for organisms that
3/1/12
燕 张
,
ucsf egan
2
1/6/12
Protein IDs Imported to EGAN
Greetings! Thanks for posting this question. Unfortunately IPI to Entrez mapping files are not part
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Protein IDs Imported to EGAN
Greetings! Thanks for posting this question. Unfortunately IPI to Entrez mapping files are not part
1/6/12
Tim Martin
12/31/11
maximum/minimum gene expression data load is backwards?
When I loaded my data set, I chose to load the maximum value. However, after EGAN launches, the
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maximum/minimum gene expression data load is backwards?
When I loaded my data set, I chose to load the maximum value. However, after EGAN launches, the
12/31/11
Tim Martin
,
ucsf egan
2
12/19/11
parent/child GO process terms
Hi Tim, These are interesting considerations. The ontological relationships between GO Terms are
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parent/child GO process terms
Hi Tim, These are interesting considerations. The ontological relationships between GO Terms are
12/19/11
Hosup Lee
,
ucsf egan
2
11/10/11
motif finding
Yes, you can do exactly that. Just make sure that the Conserved Domain (CDD) Association Node data
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motif finding
Yes, you can do exactly that. Just make sure that the Conserved Domain (CDD) Association Node data
11/10/11
Hosup Lee
,
ucsf egan
2
11/7/11
Import file to EGAN
Hello! Thanks for writing. I'm happy to help you use EGAN for proteomics (and other) data. For
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Import file to EGAN
Hello! Thanks for writing. I'm happy to help you use EGAN for proteomics (and other) data. For
11/7/11