Looks good Derrick, I'll take a closer look too before tomorrow -Dan

Hi guys, I recommitted changes to doRun_prc, so it should be working again. It is still untested so

Hi Dan, Good catch, somehow there was a missing line for recalculating the boxcoxOneSimSumStats in

Hi Derrick, Sorry I've been out of internet contact, fixing my branch to the trunk sounds like a

Greetings all, I'm working on switching the OU optims to the optimx search but I'm having

Ok I'll keep that in mind, thanks Brian! Barb the overhead on the parallelization seems pretty

Right! I always forget that the cluster is set up with modules now. Good call Brian, that will be

Greetings Brian and Barb, I'm looking into parallelizing the ABC-PRC step in doRun and I have a

Greetings all, I've changed some more loops to apply (mostly in the doRun but also simple ones in

We just profiled the overall change once we got rid of S3, not the change by steps (it's easiest

Hi Hilmar, Thanks for your assistance. I'm sure that the hackathon kept you busy ;-). We don'

Actually you may want to hold off on that, it doesn't seem like it's working now on my

Greetings, I've run through the doSimulation.R file and pulled out all the for loops and replaced

Ok I just figured that out how to index the list, it was much simpler than I expected, I may have

On Mon, Jun 4, 2012 at 10:59 PM, Brian O'Meara <bom...@utk.edu> wrote: install.packages(

Ok that makes more sense, I was just looking at the profiles so they were off but the results of the

Thanks guys, it seems like it's running now so I think it should be good to go! -Dan From: treevo

Hi Derrick I have our lab's dropbox up and working on my linux(es both on the older Ubuntu 2.10

D'oh, update again. Sorry. Derrick On 5/24/12 8:02 AM, Daniel Gates wrote: > Hi Derrick, >

Greetings, I ran some more profiling yesterday and I had a hang up again but I let it run for quite

Hi Derrick, I've tried that earlier and it still hung up. Yesterday I tried again with turning

Hi All, Just a reminder of our weekly chat tomorrow, 12 eastern. I'm not sure who is available (I

It's simpler than that ;-). Its just a shell script, so just create the Rprof output file, then

What happens if you pass these to pls (I don't want to go through the effort to convert print()

sounds good! From: treevo-...@googlegroups.com [treevo-...@googlegroups.com] on behalf of

Ok, hopefully it is fixed for you. It isn't as simple as just adding those file names to the

You might want to look at http://svnbook.red-bean.com/ as a guide to subversion. Chapter 2 is the