Groups
Sign in
Groups
TIGER Project
Conversations
About
Send feedback
Help
TIGER Project
Contact owners and managers
1–19 of 19
Mark all as read
Report group
0 selected
Andrew W
12/5/20
Help with Tiger and MADE
I am new to TIGER and MADE. Someone please share with me an example of MADE. How do I make the T
unread,
Help with Tiger and MADE
I am new to TIGER and MADE. Someone please share with me an example of MADE. How do I make the T
12/5/20
ivan valdes
,
Paul Jensen
3
5/3/18
problem with MADE
Ok Thanks, MADE now works perfectly Regards Ivan El martes, 1 de mayo de 2018, 20:53:44 (UTC+2), Paul
unread,
problem with MADE
Ok Thanks, MADE now works perfectly Regards Ivan El martes, 1 de mayo de 2018, 20:53:44 (UTC+2), Paul
5/3/18
Ashlin James Poruthoor
2
6/22/17
Help with testing !
Update on my problem : The issue was due to inappropriate saving of path and unnecessary changing of
unread,
Help with testing !
Update on my problem : The issue was due to inappropriate saving of path and unnecessary changing of
6/22/17
AngharadGreen
,
Paul Jensen
2
5/2/17
Using MADE to integrate RNAseq data with a metabolic model and predicting essential genes.
Hi Angharad, Thanks for your interest in our software. Deleting the gene states using COBRA or doing
unread,
Using MADE to integrate RNAseq data with a metabolic model and predicting essential genes.
Hi Angharad, Thanks for your interest in our software. Deleting the gene states using COBRA or doing
5/2/17
gianluca mattei
12/6/16
bug in made function in tiger v1.2 beta ?
Hi all, I found a possible bug in made function. When I run it I get this error: Error using cell/
unread,
bug in made function in tiger v1.2 beta ?
Hi all, I found a possible bug in made function. When I run it I get this error: Error using cell/
12/6/16
Paul Jensen
, …
gianluca mattei
11
12/5/16
Version 1.2.0-beta is available
Hi all, I found a possible bug in made function. When I run it I get this error: Error using cell/
unread,
Version 1.2.0-beta is available
Hi all, I found a possible bug in made function. When I run it I get this error: Error using cell/
12/5/16
Rose Jeeves
11/25/16
atoms error
Hi All, I was wondering if anyone had come across this problem before. I am trying to run imat with
unread,
atoms error
Hi All, I was wondering if anyone had come across this problem before. I am trying to run imat with
11/25/16
Marco Fondi
,
Paul Jensen
3
6/18/15
question on add_gpr option in cobra_to_tiger
Hi everyone, After working with Marco offline, we discovered a conflict in his Matlab path. Another
unread,
question on add_gpr option in cobra_to_tiger
Hi everyone, After working with Marco offline, we discovered a conflict in his Matlab path. Another
6/18/15
Henrik C.
,
Paul Jensen
3
11/21/14
Maximum recursion limit of 500 reached using iMAT
Hello Paul, thank you very much. Indeed cutting of some long/complex GPR rules short "solved
unread,
Maximum recursion limit of 500 reached using iMAT
Hello Paul, thank you very much. Indeed cutting of some long/complex GPR rules short "solved
11/21/14
shangzhong Li
,
Paul Jensen
2
3/4/14
test_tiger fail
Hi, Can you let us know what version of TIGER you're using? You can find out by typing
unread,
test_tiger fail
Hi, Can you let us know what version of TIGER you're using? You can find out by typing
3/4/14
mrc...@gmail.com
, …
Paul Jensen
9
2/7/14
error on test__made
Hi Henrik, To run the tests, you need to be in the 'TIGER/test/unit directory' (where '
unread,
error on test__made
Hi Henrik, To run the tests, you need to be in the 'TIGER/test/unit directory' (where '
2/7/14
mrc...@gmail.com
,
Paul Jensen
4
12/9/13
obj function = 0 in MADE
Forgot to add that, in these two cases, even the flux distributions vary a lot among the two
unread,
obj function = 0 in MADE
Forgot to add that, in these two cases, even the flux distributions vary a lot among the two
12/9/13
Lisa Leone
,
Jason Yang
2
2/1/13
Gimme iMAT MADE example errors
Hi Lisa, Looks to me that the first error is a typo. Changing line 9 of extract_cobra.m to the
unread,
Gimme iMAT MADE example errors
Hi Lisa, Looks to me that the first error is a typo. Changing line 9 of extract_cobra.m to the
2/1/13
Gurudutta
, …
Paul Jensen
4
9/11/12
TIGER-MADE results
Hi Rob, MADE functions by removing genes from a model to create a more specific model. This implies
unread,
TIGER-MADE results
Hi Rob, MADE functions by removing genes from a model to create a more specific model. This implies
9/11/12
Hyun-Seob
,
Paul Jensen
4
8/23/12
Errors in gimme_imat_made_examples.m
It works! Thank you! On Tuesday, August 14, 2012 6:34:42 PM UTC-4, Paul Jensen wrote: Hi, Here are
unread,
Errors in gimme_imat_made_examples.m
It works! Thank you! On Tuesday, August 14, 2012 6:34:42 PM UTC-4, Paul Jensen wrote: Hi, Here are
8/23/12
Gurudutta
,
Paul Jensen
5
3/29/12
problem using made110209
Hii, i found this error message. It says too many output arguments, which is standard as per the
unread,
problem using made110209
Hii, i found this error message. It says too many output arguments, which is standard as per the
3/29/12
Ninad Kulkarni
,
Paul Jensen
2
1/17/12
iMAT implementation
Hi Ninad, iMAT, MADE, and GIMME can all result in MILP problems that take a very long time to solve.
unread,
iMAT implementation
Hi Ninad, iMAT, MADE, and GIMME can all result in MILP problems that take a very long time to solve.
1/17/12
Felipe Aceituno
,
Paul Jensen
2
10/27/11
problems with made
Hi Felipe, The solution time for MADE depends almost entirely on the MILP solver. The MADE algorithm
unread,
problems with made
Hi Felipe, The solution time for MADE depends almost entirely on the MILP solver. The MADE algorithm
10/27/11
Paul Jensen
10/24/11
Version 1.0.1 is released
Version 1.0.1 of TIGER is now available on the project webpage (http://csbl.bitbucket.org/tiger/).
unread,
Version 1.0.1 is released
Version 1.0.1 of TIGER is now available on the project webpage (http://csbl.bitbucket.org/tiger/).
10/24/11