Re: T-Coffee pdf output

[Paolo Di Tommaso]

Hi Darrell, 

The pdf output could be an alternative as Cedric pointed out. But your problem sounds really strange. 

How are you trying to print the T-Coffee output? I'm supposing that you are using an internet browser to do that. Which one? 

Cheers,

Paolo Di Tommaso

Software Engineer 

Comparative Bioinformatics Group

Centre de Regulacio Genomica (CRG)

Dr. Aiguader, 88

08003 Barcelona, Spain

On Sep 8, 2011, at 8:36 AM, Cedric Notredame wrote:

In theory if you request

-output score_pdf you should get what you want. In case it does not work out for you I am CCing Paolo di Tommaso my who will help you further.

Cheers

Cedric

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Dr Cedric Notredame

Group Leader

Notredame's lab - Comparative Bioinformatics Group

Bioinformatics and Genomics Programme

Room 440.03

Centre de Regulacio Genomica (CRG)

Dr. Aiguader, 88

08003 Barcelona

Spain

Ph#     + 34 93 316 02 71

Fax#    + 34 93 316 00 99

Mobile# + 34 66 250 47 82

email  cedric.n...@crg.eu

url    www.tcoffee.org

blog   cedricnotredame.blogspot.com

ResearcherID: G-3868-2010

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On 7 Sep 2011, at 22:53, "Stafford, Darrel W" <d...@email.unc.edu> wrote:

Dear Dr. Notredame,

I have been using TCOFFEE Psi alignment to compare sequences and I am having a difficult time handling the output.  For some reason it does not print in color when I try to print directly.  I would like to have a pdf ouput that maintained each set of alignments on one page.  Do you have NY suggestions.  This is obviously doing a better job of alignment than the version of clustalW that I have been using.

 

Darrel Stafford

UNC Chapel Hill, NC