Synthetic Biology Data Exchange Group

Contact owners and managers

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Welcome to the Synthetic Biology Data Exchange Group. This group is focused on developing and using tools that facilitate the communication of data, information, and knowledge between members of the Synthetic Biology Community.

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8/3/15

SBOL 2.0 Specification Released

The SBOL editors are pleased to announce the official release of the next major version of the

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SBOL 2.0 Specification Released

The SBOL editors are pleased to announce the official release of the next major version of the

8/3/15

5/27/15

Call for Late-Breaking Posters - Deadline June 10 (7th International Workshop on Bio-Design Automation)

[Apologies if you receive multiple copies of this announcement] [Please help forward it to other

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Call for Late-Breaking Posters - Deadline June 10 (7th International Workshop on Bio-Design Automation)

[Apologies if you receive multiple copies of this announcement] [Please help forward it to other

5/27/15

4/6/15

DEADLINE APRIL 17th: 7th International Workshop on Bio-Design Automation: 2nd Call for Papers

[Apologies if you receive multiple copies of this announcement] [Please help forward it to other

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DEADLINE APRIL 17th: 7th International Workshop on Bio-Design Automation: 2nd Call for Papers

[Apologies if you receive multiple copies of this announcement] [Please help forward it to other

4/6/15

3/23/15

7th International Workshop on Bio-Design Automation: Call for Papers - Deadline April 17, 2015

[Apologies if you receive multiple copies of this announcement] [Please help forward it to other

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7th International Workshop on Bio-Design Automation: Call for Papers - Deadline April 17, 2015

[Apologies if you receive multiple copies of this announcement] [Please help forward it to other

3/23/15

Michal Galdzicki

2/21/13

IWBDA2013 London: Call for Abstracts

The International Workshop on Bio-Design Automation (IWBDA) will be immediately after SB6.0 this year

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IWBDA2013 London: Call for Abstracts

The International Workshop on Bio-Design Automation (IWBDA) will be immediately after SB6.0 this year

2/21/13

12/13/12

Looking for parts with high-quality data sheets

We are looking for example of parts with high-quality data sheets that we could cite in an upcoming

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Looking for parts with high-quality data sheets

We are looking for example of parts with high-quality data sheets that we could cite in an upcoming

12/13/12

Cesar A. Rodriguez, Michal Galdzicki3

9/25/12

New SBOL Visual Image Sets

Mike, Let me start with a smile :-D This one has gone back and forth at least three times. I'm

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New SBOL Visual Image Sets

Mike, Let me start with a smile :-D This one has gone back and forth at least three times. I'm

9/25/12

Cesar Rodriguez

9/14/12

Open Government, Open Data, Open Source

Gals and guys, The following message isn't about Synthetic Biology but it is related to data

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Open Government, Open Data, Open Source

Gals and guys, The following message isn't about Synthetic Biology but it is related to data

9/14/12

Cesar A. Rodriguez, … Michal Galdzicki18

9/10/12

BioBrick Parts Catalog

Kevin, A good place to start with the SBPkb is http://www.sbolstandard.org/sbol-in-use/sbpkb and the

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BioBrick Parts Catalog

Kevin, A good place to start with the SBPkb is http://www.sbolstandard.org/sbol-in-use/sbpkb and the

9/10/12

Michal Galdzicki, MadraghRua2

9/5/12

Registry XML (RSBPML) to SBOL format converter - updated

Michal We are in the process of generating SBOL for parts, composite parts and devices. I have SBOL.

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Registry XML (RSBPML) to SBOL format converter - updated

Michal We are in the process of generating SBOL for parts, composite parts and devices. I have SBOL.

9/5/12

Cesar A. Rodriguez, … Herbert Sauro4

7/20/12

Big Day for Systems Biology

I 've had difficulties getting the paper too and now I'm about to get on a plane. But some

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Big Day for Systems Biology

I 've had difficulties getting the paper too and now I'm about to get on a plane. But some

7/20/12

Giovanni Stracquadanio, … MadraghRua3

7/9/12

[EXTENDED DEADLINE] Biological Systems Design 2012 - ISMB 2012 - July 13, 2012, Long Beach, CA

Hi Folks I have a complementary talk in the Technology Track on July 16th at ISMB. I found out about

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[EXTENDED DEADLINE] Biological Systems Design 2012 - ISMB 2012 - July 13, 2012, Long Beach, CA

Hi Folks I have a complementary talk in the Technology Track on July 16th at ISMB. I found out about

7/9/12

Cesar A. Rodriguez, … Chris J. Myers6

4/19/12

Publications Citing SBOL

Nathan, Full compliance would have been icing on the cake. I still like the cake. :-D There is a lot

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Publications Citing SBOL

Nathan, Full compliance would have been icing on the cake. I still like the cake. :-D There is a lot

4/19/12

Timothy Ham, Michal Galdzicki2

3/28/12

SequenceOntology types vs SO names

sounds reasonable. I created an issue for this request here: https://github.com/SynBioDex/libSBOLj/

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SequenceOntology types vs SO names

sounds reasonable. I created an issue for this request here: https://github.com/SynBioDex/libSBOLj/

3/28/12

2/17/12

International Workshop on Bio-Design Automation (IWBDA)

Please note that the date just changed. It will be on !!!! Sunday-Monday, June 3-4, 2012 !!!!!

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International Workshop on Bio-Design Automation (IWBDA)

Please note that the date just changed. It will be on !!!! Sunday-Monday, June 3-4, 2012 !!!!!

2/17/12

Cesar A. Rodriguez

10/25/11

Controlled vocabularies and semantics in systems biology

http://www.nature.com/msb/journal/v7/n1/full/msb201177.html?WT.ec_id=MSB-v7/n1

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Controlled vocabularies and semantics in systems biology

http://www.nature.com/msb/journal/v7/n1/full/msb201177.html?WT.ec_id=MSB-v7/n1

10/25/11

Cesar A. Rodriguez

10/14/11

DNASU - Plasmid Repository

Interesting resource: http://dnasu.asu.edu/DNASU/Home.jsp Cesar

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DNASU - Plasmid Repository

Interesting resource: http://dnasu.asu.edu/DNASU/Home.jsp Cesar

10/14/11

Cesar A. Rodriguez

9/26/11

White House Touts NSF's New Family-Friendly Policies - ScienceInsider

A solid step forward by the NSF: http://news.sciencemag.org/scienceinsider/2011/09/white-house-touts-

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White House Touts NSF's New Family-Friendly Policies - ScienceInsider

A solid step forward by the NSF: http://news.sciencemag.org/scienceinsider/2011/09/white-house-touts-

9/26/11

Sung won Lim, … Cesar A. Rodriguez33

9/7/11

This issue was debated before. The decision was to go with libSBOLj as the reference library. We have

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This issue was debated before. The decision was to go with libSBOLj as the reference library. We have

9/7/11

Cesar A. Rodriguez, … Deepak Chandran15

9/6/11

BioJava 3.0.2 released

From my observation, Bioinformatics has stayed away from C/C++, except for command-line tools such as

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BioJava 3.0.2 released

From my observation, Bioinformatics has stayed away from C/C++, except for command-line tools such as

9/6/11

Cesar A. Rodriguez

9/2/11

Fwd: DARPA BAA 11-60: Living Foundries: Advanced Tools and Capabilities for Generalizable Platforms

From: DARPA-BAA-11-60 <DARPA-B...@darpa.mil> Date: September 2, 2011 10:52:48 AM PDT To:

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Fwd: DARPA BAA 11-60: Living Foundries: Advanced Tools and Capabilities for Generalizable Platforms

From: DARPA-BAA-11-60 <DARPA-B...@darpa.mil> Date: September 2, 2011 10:52:48 AM PDT To:

9/2/11

Raik Grünberg, Michal Galdzicki2

8/31/11

Raik, great to hear from you. Thanks for the corrections, I updated the Turtle primer to correct the

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Raik, great to hear from you. Thanks for the corrections, I updated the Turtle primer to correct the

8/31/11

Matthew Pocock, … Chris J. Myers5

8/21/11

SBOL data model diagram and documentation

Thanks. Should we change start to genBankStart? Chris On Aug 21, 2011, at 5:33 PM, Michal Galdzicki

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SBOL data model diagram and documentation

Thanks. Should we change start to genBankStart? Chris On Aug 21, 2011, at 5:33 PM, Michal Galdzicki

8/21/11

8/9/11

Introducing JBEI XML formats

In addition to existing web service mechanisms to exchange data, the JBEI-ICE group is pleased to

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Introducing JBEI XML formats

In addition to existing web service mechanisms to exchange data, the JBEI-ICE group is pleased to

8/9/11

Cesar A. Rodriguez, Jake Beal2

8/9/11

PLoS ONE: Automatic Compilation from High-Level Biologically-Oriented Programming Language to Genetic Regulatory Networks

> Jake, Congrats! > http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022490 Thank

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PLoS ONE: Automatic Compilation from High-Level Biologically-Oriented Programming Language to Genetic Regulatory Networks

> Jake, Congrats! > http://www.plosone.org/article/info:doi/10.1371/journal.pone.0022490 Thank

8/9/11

Cesar A. Rodriguez

8/2/11

OpenFreezer: a reagent information management software system : Nature Methods : Nature Publishing Group

This might be of interest to members of our groups: http://www.nature.com/nmeth/journal/v8/n8/abs/

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OpenFreezer: a reagent information management software system : Nature Methods : Nature Publishing Group

This might be of interest to members of our groups: http://www.nature.com/nmeth/journal/v8/n8/abs/

8/2/11

Cesar A. Rodriguez

7/22/11

Computable Document Format (CDF)

Gals and Guys, This might be of interest to our group: Wolfram is launching the Computable Document

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Computable Document Format (CDF)

Gals and Guys, This might be of interest to our group: Wolfram is launching the Computable Document

7/22/11

Timothy Ham, Cesar A. Rodriguez2

7/15/11

Google code now supports Git

Strong move by Google. On Jul 15, 2011, at 1:23 PM, Timothy Ham wrote: > Hooray

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Google code now supports Git

Strong move by Google. On Jul 15, 2011, at 1:23 PM, Timothy Ham wrote: > Hooray

7/15/11

6/7/11

new DARPA funding for Synth Bio

I think as a SB data group, this should be interesting/useful for us. Alicia Jackson will be present

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new DARPA funding for Synth Bio

I think as a SB data group, this should be interesting/useful for us. Alicia Jackson will be present

6/7/11

3/4/11

Re: Devices v1.0.doc (toumesh@gmail.com)

Dear All, I have created a webpage and voting form in Google sites to poll for the SBOLv devices

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Re: Devices v1.0.doc (toumesh@gmail.com)

Dear All, I have created a webpage and voting form in Google sites to poll for the SBOLv devices

3/4/11

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