Structure Harvester, indfile and parameter file

[Student]

Dear all,

can you use the indfile exported by Structure Harvester, directly in
CLUMPP or is some modification needed? I have taken a paramfile from
CLUMPP examples and substituted my info into this correctly formatted
file. When trying to run CLUMPP I get the error message "unable to
read value in indfile. Please check the indfile and the value at row 2
and column 1. This problem could also be caused by giving any of the
parameters R, K, C the wrong number.
I am sure my R, K and C are correct (impossible to get wrong if you
know your data). So I am wondering if there is a Harvester/ CLUMPP
compatibility problem. There are too many lines for me to
systematically check spaces, tabs, brackets in the Harvester indfile.
Thanks

[Student]

Bug now fixed: "the bug stemmed from the fact that the output of newer
versions of STRUCTURE include 90% probability intervals for the
inferred cluster memberships. As STRUCTURE is updated and new features
are added, the output formatting sometimes breaks the Harvester.
Harvester has now been corrected." Thanks Dent.

[Mangaravite]

Hello,
I had the same error running my data. But the answer did not help me.
Could you solve your problem? If I run STRUCTURE in Wind. and the CLUMPP in Unix, is it possible that appear any incompatibility?

Thanks anyway!

[Vikram Chhatre]

Send us all your CLUMPP files in a zip archive.

V

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