New TPP Release: Version 3.0.0 SQUALL
Joshua Tasman
We are releasing the next revision of the Trans-Proteomic Pipeline,
named version 3.0.0 - SQUALL (cygwin package ISB-MS-Tools-2.1-0a). This
version includes the following recent updates and improvements:
+ ProteinProphet:
Complete rewrite in C++ for speed. Functionality should be unchanged
from previous version. Related pipeline programs updated to use this
version.
+ PeptideProphet: Addition of +4,+5 charge models; updates to accurate
mass model.
+ retention time added to pepxml files for Out2XML, Sequest2XML converters.
+ PepXMLViewer and plot-msms:
updates to handle maldi-type filename conventions.
And other miscellaneous bug fixes.
------------
For downloading and installing the Windows version please visit the
following page:
"http://tools.proteomecenter.org/windows.php"
and please take a look at our installation guide on our wiki:
"http://tools.proteomecenter.org/wiki/index.php?title=TPP:User_Documentation"
For downloading the sourcecode please go to the following link:
"http://sourceforge.net/project/showfiles.php?group_id=69281&package_id=126912"
Thanks for your continued use and support,
The SPC Tools team: Josh, Luis, David
Ulrich auf dem Keller
thank you for releasing 3.0.0 - SQUALL!
For the Mac enthusiasts among the TPP users I added some new notes to
the wiki documentation for compiling TPP_v3.0.0 on the Mac.
http://tools.proteomecenter.org/wiki/index.php?
title=TPP:Installing_on_Mac_OSX
Cheers,
Ulrich
Brian Pratt
Excellent docs! I noticed the part about turning off -Werror for
ProteinProphet, could I ask you to turn it back on again and send me the
errors your're getting? I'm never happy when code throws warnings of any
kind, as getting into the habit of ignoring "safe" warnings can lead to
ignoring serious warnings later on.
We should just get your changes into the official Makefile so you don't have
to go through this on every release. But, as this is getting a bit
technical for this email list we should probably take the conversation
off-list, or over to spctoo...@googlegroups.com .
Thanks,
Brian Pratt
www.insilicos.com/IPP.html