Export result data for blast?

[ChargedPeptide]

Hi guys, I'm running a couple of searches with an un-annotated
datbase.
As such I would like to take the results from the prot.xml file and
run a blastP search with the sequences against an annotated related
databases.
Is there any easy way to export fasta sequences of a search together
with their protein ID? I've only come up with a very roundabout way
using excel and a couple of other utilities which is very labour
intensive.
If there is any third party prot.xml parsing utility or such that
anyone on this board is using that would be very much appreciated.
Even just exporting a list of protein IDs that does not, like now, use
several IDs per line would be useful.

Any hints from the community? Hoping I'm just being thick here...

[zeyu sun]

Hi, ChargedPeptide,

Did you have a solution to the problem you described in this post? I came across the same problem, and would be much appreciated if you can share your experiences with me. 

Sun