Received: by 10.151.111.18 with SMTP id o18mr2639415ybm.40.1290017741502;
        Wed, 17 Nov 2010 10:15:41 -0800 (PST)
X-BeenThere: spctools-announce@googlegroups.com
Received: by 10.151.133.8 with SMTP id k8ls475531ybn.4.p; Wed, 17 Nov 2010
 10:15:40 -0800 (PST)
Received: by 10.151.109.19 with SMTP id l19mr510573ybm.51.1290017740566;
        Wed, 17 Nov 2010 10:15:40 -0800 (PST)
MIME-Version: 1.0
Received: by 10.100.96.11 with SMTP id t11mr289781anb.62.1289991533747; Wed,
 17 Nov 2010 02:58:53 -0800 (PST)
Received: by g16g2000yqb.googlegroups.com with HTTP; Wed, 17 Nov 2010 02:58:53
 -0800 (PST)
Date: Wed, 17 Nov 2010 02:58:53 -0800 (PST)
X-IP: 130.232.202.233
User-Agent: G2/1.0
X-HTTP-UserAgent: Mozilla/5.0 (Windows; U; Windows NT 6.1; el; rv:1.9.2.12)
 Gecko/20101026 Firefox/3.6.12,gzip(gfe)
Message-ID: <6989b2f8-ea82-446d-b6ee-2c3a06566860@g16g2000yqb.googlegroups.com>
Subject: Thermo RAW to mzXML conversion
From: Spiros Papakostas <spiros.papakos...@gmail.com>
To: spctools-announce <spctools-announce@googlegroups.com>
Content-Type: text/plain; charset=ISO-8859-1

Dear all,

I keep failing to convert my Thermo RAW files to the mzXML format with
the TPP. I paste my RAW files to the   "c: / Inetpub / wwwroot / ISB /
data /" directory, select them via the TPP interface, press convert to
mzXML --> the whole process lasts less than a second and no mzXML
files are created.

I did some troubleshooting and it seems the command "c:\Inetpub\tpp-bin
\ReAdW -v --mzXML c:/Inetpub/wwwroot/ISB/data/20101101_my_data.RAW" is
directed to a folder (ReAdW) that doesn't exist in the tpp-bin
location. Plus I couldn't find the ReAdW.exe that supposedly does the
conversion.

Can anyone help me on this?

Details that might be relevant: I am trying to do the conversion in a
Win7 (32bit) machine. Thermo raw data were acquired in profile and
fragmentation scans in centroid modes. So I did use the option
"Centroid all scans (MS1 and MS2)". Of course, I tried without it with
no success.

Cheers,
Spiros