spctools-announce Google Group

new TPP release: 4.3.1

natalie.tas...@insilicos.com (Natalie Tasman) — Wed, 09 Sep 2009 20:52:24 UT

We are proud to have released an update for the Trans-Proteomic
Pipeline (TPP) software, 4.3.1 (4.3 revision 1).
An installer is available for Windows as well as source code for Linux
and Mac OS X from all the
usual locations; for detailed information including release notes,
please see the corresponding post on spctools-discuss:

new TPP release: 4.3.0

natalie.tas...@insilicos.com (Natalie Tasman) — Fri, 07 Aug 2009 20:58:54 UT

We are proud to have released a major update for the Trans-Proteomic
Pipeline (TPP) software, 4.3.0 (4.3 revision 0).
An installer is available for Windows as well as source code for Linux
and Mac OS X from all the
usual locations; for detailed information including release notes,
please see the corresponding post on spctools-discuss:

SPC at ASMS!

lmend...@systemsbiology.org (Luis Mendoza) — Fri, 29 May 2009 17:31:15 UT

This upcoming week, the SPC software tools team will be hosting a booth at
the ASMS Conference (#152, near the Employment Center; we're listed as the
Institute for Systems Biology on the ASMS website.) Please feel free to
drop by and say hello to me, and bring your TPP-related software and/or
installation questions. Several of our colleagues will be presenting

leaving the ISB

ntas...@systemsbiology.org (Natalie Tasman) — Fri, 08 May 2009 20:30:50 UT

Hello all,
It has been a pleasure and honor to work with everyone in our
proteomics software community during my time at the Aebserold Lab
Seattle / SPC (ISB) over the last three years. Today is my last day
at the ISB. Next month I will be starting a new position at
Insilicos. As you all probably know from Brian Pratt's involvement

new TPP release: 4.2.1

ntas...@systemsbiology.org (Natalie Tasman) — Wed, 08 Apr 2009 22:16:14 UT

We have released an update for the Trans-Proteomic Pipeline
(TPP) software, 4.2.x series, bringing the current version to 4.2
revision 1 (4.2.1). Releases are
available for native windows as well as linux and Mac OS X source from all the
usual locations (please see below).
For detailed information, please see the corresponding post on spctools-discuss:

Re: [spctools-announce] Installation problem

ntas...@systemsbiology.org (Natalie Tasman) — Mon, 23 Feb 2009 20:07:14 UT

Hello Manfred,

I'll continue this thread on spctools-discuss.

Natalie

Installation problem

mra...@etc.a-star.edu.sg (ManRai) — Mon, 23 Feb 2009 09:52:27 UT

Hi,
I downloaded the new TPP and tried to install it, but it crashes
always with an error that in C:/Inetpup.... cannot be written. I still
have some remains of an older version on my 64bit Windows computer,
but I have no idea how to remove it, the wiki page is empty. Any help?
Thanks a lot
Manfred

new TPP release: 4.2.0

ntas...@systemsbiology.org (Natalie Tasman) — Thu, 19 Feb 2009 19:30:28 UT

We are proud to offer a major update to the TPP, release 4.2.0, with
many bugfixes, improvements, and new features. Releases are available
for native windows as well as linux/osx source code from the usual
locations.
For more information, please see the corresponding post on spctools-discuss:
[link]

next SPC software course: Apr. 27-May 1, 2009

ntas...@systemsbiology.org (Natalie Tasman) — Tue, 27 Jan 2009 02:00:37 UT

We are pleased to announce that the next TPP course will take place April 27
through May 1, 2009, at the Institute for Systems Biology (Seattle, WA.)
Information about the course, registration, and example lectures from
previous courses, can be found here:
[link]
This is an excellent opportunity to hear lectures on the details of the TPP

Error during trapper running

hover...@gmail.com (hover) — Tue, 18 Nov 2008 22:43:09 UT

I met a problem during the trapper programmer running. i tried to
converter the .d files to mzXML by trapper. The error message pops up
as "“ The exception unknown software exception (0x40000015) occurred
in the application at location (0x0042f6b7.)” What could be the
problem?

The instrument I used is Agilent LC/MSD TOF system with chip-cube

TPP 4.1.1 maintenance release available

ntas...@systemsbiology.org (Natalie Tasman) — Sat, 15 Nov 2008 01:11:40 UT

For more information, please see the full post at
[link]
-Natalie

Reminder: TPP Windows requires ActivePerl

ntas...@systemsbiology.org (Natalie Tasman) — Tue, 11 Nov 2008 20:43:29 UT

As previously mentioned, from TPP 4.1 forward, the Windows version of the
TPP requires that you install the perl language from ActiveState, called
ActivePerl. *ActivePerl version 5.8 is recommended, as it will cleanly
overwrite the TPP 4.0.x's custom version of perl which might have been
installed, while ActivePerl version 5.10 will not.* ActivePerl can be

new TPP release: 4.1.0

ntas...@systemsbiology.org (Natalie Tasman) — Tue, 11 Nov 2008 01:37:49 UT

We are proud to offer a long-awaited major update to the TPP, release 4.1.0.
Releases are available for native windows as well as linux/osx source code
from the usual locations.
For more information, please see the corresponding post on spctools-discuss:
[link]

upcoming Windows TPP dependency: ActivePerl 5.8.8

ntas...@systemsbiology.org (Natalie Tasman) — Fri, 17 Oct 2008 20:34:21 UT

Hello all,
With the native Windows installer in the TPP 4.0.x series, a version of the
Perl language was installed automatically if an apropriate one was not
found. We've found that there is a much better solution than for us than to
try to maintain our own custom Windows Perl installation, which will ensure

Re: [spctools-announce] Re: Announcing Trapper: Agilent MassHunter (.d)-to-mzXML converter

ntas...@systemsbiology.org (Natalie Tasman) — Wed, 17 Sep 2008 18:14:19 UT

(I'm continuing this thread on spctools-discuss.
Natalie)