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Hongxi
,
Mauro Truglio
4
2/9/18
No PDF output files
Hi Mauro, I try again, and it works. Turns out that I accidentally delete R, after I reinstall R, I
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No PDF output files
Hi Mauro, I try again, and it works. Turns out that I accidentally delete R, after I reinstall R, I
2/9/18
Mauro Truglio
2/21/17
SolexaQA++ v.3.1.7.1
Hi everyone, SolexaQA++ has been updated to version 3.1.7.1. This new version fixes a bug in tile
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SolexaQA++ v.3.1.7.1
Hi everyone, SolexaQA++ has been updated to version 3.1.7.1. This new version fixes a bug in tile
2/21/17
Mauro Truglio
2/8/17
SolexaQA++ v.3.1.7
Hi everyone, SolexaQA++ has been updated to version 3.1.7. The new version is compatible with NextSeq
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SolexaQA++ v.3.1.7
Hi everyone, SolexaQA++ has been updated to version 3.1.7. The new version is compatible with NextSeq
2/8/17
Andrew Veale
, …
Mauro Truglio
3
12/6/16
Uniformly poor read quality
Hi Andrew, I can add something to this. In the past, another user had a similar issue, ie huge
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Uniformly poor read quality
Hi Andrew, I can add something to this. In the past, another user had a similar issue, ie huge
12/6/16
Mauro Truglio
12/6/16
SolexaQA++ v. 3.1.6
Hi everyone, SolexaQA++ has been updated to version 3.1.6. The new version contains a few minor
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SolexaQA++ v. 3.1.6
Hi everyone, SolexaQA++ has been updated to version 3.1.6. The new version contains a few minor
12/6/16
Mauro Truglio
5/17/16
SolexaQA++ v.3.1.5
Hi everyone, SolexaQA++ has been updated to version 3.1.5. The new version contains an addition to
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SolexaQA++ v.3.1.5
Hi everyone, SolexaQA++ has been updated to version 3.1.5. The new version contains an addition to
5/17/16
Mauro Truglio
8/17/15
SolexaQA++ v.3.1.4
Hi everyone, SolexaQA++ has been updated to version 3.1.4. The new version contains a bugfix in the
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SolexaQA++ v.3.1.4
Hi everyone, SolexaQA++ has been updated to version 3.1.4. The new version contains a bugfix in the
8/17/15
Mauro Truglio
1/21/15
SolexaQA++ version 3.1.3
Hi everyone, SolexaQA++ has been updated to version 3.1.3. The new version contains a bugfix in the
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SolexaQA++ version 3.1.3
Hi everyone, SolexaQA++ has been updated to version 3.1.3. The new version contains a bugfix in the
1/21/15
Mauro Truglio
11/24/14
SolexaQA++ version 3.1.2
Hi everyone, SolexaQA++ has been updated to version 3.1.2. This update fixes a minor bug in the
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SolexaQA++ version 3.1.2
Hi everyone, SolexaQA++ has been updated to version 3.1.2. This update fixes a minor bug in the
11/24/14
Mauro Truglio
11/9/14
SolexaQA++ version 3.1.1
Hi everyone, SolexaQA++ has been updated to version 3.1.1. This update fixes a bug in LengthSort when
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SolexaQA++ version 3.1.1
Hi everyone, SolexaQA++ has been updated to version 3.1.1. This update fixes a bug in LengthSort when
11/9/14
MPC
9/30/14
Announcement
SolexaQA++ version 3.1
Hi everyone, SolexaQA++ has been updated to version 3.1. This update fixes various minor bugs,
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Announcement
SolexaQA++ version 3.1
Hi everyone, SolexaQA++ has been updated to version 3.1. This update fixes various minor bugs,
9/30/14
Mauro Truglio
,
MPC
2
8/5/14
New Release SolexaQA++ v3.0
Apologies. The website address in the previous email appears to link incorrectly. Please use the
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New Release SolexaQA++ v3.0
Apologies. The website address in the previous email appears to link incorrectly. Please use the
8/5/14
MPC
5/19/14
New Release v.2.5
Hi everyone, A new version of the SolexaQA software (v.2.5) has been released. This version fixes a
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New Release v.2.5
Hi everyone, A new version of the SolexaQA software (v.2.5) has been released. This version fixes a
5/19/14
MPC
5/15/14
New Release v.2.4
Hi everyone, A new version of the SolexaQA software (v.2.4) has been released. This version fixes a
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New Release v.2.4
Hi everyone, A new version of the SolexaQA software (v.2.4) has been released. This version fixes a
5/15/14
Lee Brooks
,
MPC
6
5/14/14
unexpected behavior with header regex
Hi Murray, The readability of your code is outstanding. This is hugely informative. I'm trying to
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unexpected behavior with header regex
Hi Murray, The readability of your code is outstanding. This is hugely informative. I'm trying to
5/14/14
Na Kyung Kim
,
MPC
2
2/18/14
Trimming paired end fastq files
Hi, Yes, standard practice would be to run DynamicTrim on both files, and then run LengthSort on the
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Trimming paired end fastq files
Hi, Yes, standard practice would be to run DynamicTrim on both files, and then run LengthSort on the
2/18/14
Matthew MacManes
,
MPC
4
8/1/13
Illumina 1.8+ format
Hi Matt, Interestingly, this error doesn't actually indicate a problem with the quality encoding.
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Illumina 1.8+ format
Hi Matt, Interestingly, this error doesn't actually indicate a problem with the quality encoding.
8/1/13
Nats Timoneda
,
MPC
2
7/30/13
input format?
Hi Natàlia, The first warning indicates that there are fewer than 10000 reads per tile. Given that a
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input format?
Hi Natàlia, The first warning indicates that there are fewer than 10000 reads per tile. Given that a
7/30/13
Natalia
7/30/13
Fwd: input file?
Hi everybody, I have files from Illumina Miseq Nextera, in fastq format and I will try to use
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Fwd: input file?
Hi everybody, I have files from Illumina Miseq Nextera, in fastq format and I will try to use
7/30/13
MPC
5/28/13
Re: SolexaQA 2.2 HiSeq2500 data
SolexaQA does not presently support compressed files. Try decompressing the file and then running
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Re: SolexaQA 2.2 HiSeq2500 data
SolexaQA does not presently support compressed files. Try decompressing the file and then running
5/28/13
MPC
12/14/12
Announcement
SolexaQA 2: Major updated software release
Version 2.0 of the SolexaQA package has just been released. This is a substantial update with several
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Announcement
SolexaQA 2: Major updated software release
Version 2.0 of the SolexaQA package has just been released. This is a substantial update with several
12/14/12
Murray Cox
2
8/6/12
Re: [solexaqa-users] Effect of DynamicTrim on paired end insert size
Yes, exactly. I must say, I'm now rather curious to see some quantitative numbers on this though.
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Re: [solexaqa-users] Effect of DynamicTrim on paired end insert size
Yes, exactly. I must say, I'm now rather curious to see some quantitative numbers on this though.
8/6/12
MPC
3/15/12
New Release v.1.12
Version 1.12 of the SolexaQA package has just been released. Due to user demand, you can now specific
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New Release v.1.12
Version 1.12 of the SolexaQA package has just been released. Due to user demand, you can now specific
3/15/12
MPC
1/23/12
New Release
Version 1.11 of the SolexaQA package has just been released. I'm not sure if I slightly
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New Release
Version 1.11 of the SolexaQA package has just been released. I'm not sure if I slightly
1/23/12
Matthew MacManes
,
MPC
2
12/19/11
take input from STDIN
Hi Matt, This is something we can look at adding in the future, but given the way the code is
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take input from STDIN
Hi Matt, This is something we can look at adding in the future, but given the way the code is
12/19/11
Michael Gooch
,
MPC
2
11/29/11
Suggestion re: output file naming
Hi, Yes, it should be possible to do something like this. I guess it might get a bit confusing with
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Suggestion re: output file naming
Hi, Yes, it should be possible to do something like this. I guess it might get a bit confusing with
11/29/11
Michael Gooch
,
MPC
2
11/28/11
Difference in trimming behavior between DynamicTrim and SolexaQA?
Hi Michael, Yes, I think you've gotten a bit confused about what the programs actually do.
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Difference in trimming behavior between DynamicTrim and SolexaQA?
Hi Michael, Yes, I think you've gotten a bit confused about what the programs actually do.
11/28/11
MPC
2
10/3/11
LengthSort error: strange header line
Hi John, Thanks for getting in touch. Yes, as you guessed, you've encountered a problem with the
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LengthSort error: strange header line
Hi John, Thanks for getting in touch. Yes, as you guessed, you've encountered a problem with the
10/3/11
Andy
,
MPC
2
8/18/11
bug?
Hi Andy, Yes, this is a continuation of the header line problem that I raised last month. In trying
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bug?
Hi Andy, Yes, this is a continuation of the header line problem that I raised last month. In trying
8/18/11
MPC
7/21/11
Illumina's changing file formats
Hi everyone, Just a quick announcement that I have just uploaded version 1.9 of the SolexaQA package.
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Illumina's changing file formats
Hi everyone, Just a quick announcement that I have just uploaded version 1.9 of the SolexaQA package.
7/21/11