RNA-seq splice junctions

[SDA]

Does anyone know where to download splice junctions for RNA-seq
analysis?

I can't seem to find them anywhere. Also, does anyone know a good
software package to analyze paired end RNA-seq data (ELAND can't).

I would appreciate your help.

[meryem M B]

hi

I developed a litle software for generating splice junction in my own intron poor smal genome of interest (a yeast genome).
But if your interested in more complex genome it won't fit.
Have you considered using  tophat - cufflinks ? Paired-end RNA-Seq read are supported and splice junction are not a prerequisite.

I hope this helps

meryem

2009/12/18 SDA <sda...@gmail.com>

--

You received this message because you are subscribed to the Google Groups "solexa" group.
To post to this group, send email to sol...@googlegroups.com.
To unsubscribe from this group, send email to solexa+un...@googlegroups.com.
For more options, visit this group at http://groups.google.com/group/solexa?hl=en.