seqMINER

To answer my own question, I have learned that sources, a tutorial, and video demo are available at

Dear developments, The tool is pretty good,but I would like ask some question. Given some reference

Dear developers, I am new to seqminer and I want to use it prepare genotype matrix for SKAT. I have

Thanks a lot!! This really helps! 在 2018年4月18日星期三 UTC-4上午10:29:53，jianhuang lin写道： Hi Tao and

Hi Mauricio, It was explained in the protocol how to reproduce the same clustering by saving and

I have multiple files that I would like to upload but I keep getting this error that says there is

Dear everyone, I am new to seqMINER and java. I downloaded seqMINER yesterday and follow the manual

Dear Tao, I am using seqMINER and it always present an error with "A JNI error has occured,

Hello all, I am new to this group and just started using seqMINER. Is it possible to give multiple

Hi, when uploading bam files I constantly get following message: error parsing text SAM file. Not

where can I get reference coordinates for mm10? How can I build my own reference coordinates Thanks

I loaded my peak file (BED) and ChIP-seq aligned reads (BAM files) and discovered nice clusters that

i have same query as working on chip control and treatment files.. On Wednesday, February 20, 2013 3:

wiating for reply :( On Friday, December 19, 2014 4:19:12 PM UTC+5:30, archana bhardwaj wrote: Hello

Thanks for the great tool! In the methods, I read "Normalized data are used only to perform the

Dear Tao, Therefore, is it possible to artificially use lower read length? For example, my reads are

Hi, I have the same issue, can't open http://zhanxw.com/seqminer/. Can anyone send a copy of the

Thanks Inti! On Monday, May 5, 2014 3:20:11 PM UTC+2, Inti wrote: Hi Madhan, I have run some large

Dear Tao and Users Good morning! I am a user of your seqminer program and I have a small problem. I

I am also intrested to know if command line option is available which may provide me better control

I was wondering if Seqminer will generate a matrix which can be extracted which is used to generate K

Dear Tao, When extension size is changed in option window the scale labes is changes in all opened

Dear All, I have a pretty much basic question..... I am using as reference data one chip-seq file and

Hi Tao, Thank you very much for sending me the file! Cheers, Swami. Swami Venkatesh On Sep 17, 2013,

It's explained on the wiki 在 2013年1月17日星期四UTC+1上午12时35分12秒，Christopher Bowman写道： On the Advance (

Hi, you need to load a real raw chipseq read file in bed or bam format, not only a interval file. Tao

Dear Sarbashis, You can do a select all (click on one density value and then ctrl-A), copy and paste

Hello, If you'd like to run seqMINER on a unix server, you have to have X windows installed on

Hi Petros, if you use a fixed k-mean seed you will get always the same result (toolsoptions/general/

The labels for the x-axis in the Merged dataset profile are taken from the current Peak extensions