On Sep 11, 11:07 am, Jeroen Demeyer <
jdeme...@cage.ugent.be> wrote:
> On 2012-09-11 17:02, kcrisman wrote:
>
> > I tried testing an upgrade on this release, from 5.0 built on my
> > previous Intel Mac to 5.3 upgraded on this Lion Mac. All seems to go
> > well, but then it wants to access mirrors one more time, claims that
> > gap and R need to be upgraded, and then (when I say yes), proceeds to
> > upgrade nearly the entire installation - or at least a large portion
> > of it - again! It's done this twice now. I'm just going to decline
> > the R and GAP upgrades next time, but I'm wondering whether there is
> > some bug introduced in the latest changes to upgrade that would cause
> > this to happen. I assume the hardware change in the meantime isn't
> > the issue, and I think 5.0 is where the gcc spkg was introduced,
> > right?
>
> There are some bugs with upgrading related to GCC, which is #13395
> (merged in sage-5.4.beta1).
Sorry, I thought that upgrading was now completely fixed, my
apologies.
>
> The fact that everything is built twice is #13415 (currently "new" but
> close to "needs review").
Good.
I do wonder about the final errors I'm getting. Everything seems fine
except R, which has given me this problem several times now. I think
that GAP may have failed the first time due to a race condition, but
I'm not going to track it down now.
mkdir /Users/.../sage-5.0/local/lib/R/include
mkdir: /Users/.../sage-5.0/local/lib/R/include: File exists
make[2]: *** [installdirs] Error 1
make[1]: *** [install] Error 1
make: *** [install] Error 1
Error installing R.
real 6m51.338s
user 9m51.308s
sys 0m41.199s
************************************************************************
Error installing package r-2.14.0.p3
************************************************************************
I think this is mentioned here [1] but I don't think there is a ticket
for it. Not upgrading on OS X 10.7 seems problematic as well.
[1]
http://trac.sagemath.org/sage_trac/ticket/13395#comment:12