Re: [sage-devel] Sage 5.3 compilation error

[Jeroen Demeyer]

On 2012-11-08 08:56, Jeffrey Edlund wrote:
> On Debian Wheezy on x86_64 with kernel 3.2.0-3-amd64 I get the
> following error:
>
> gcc -o gp-dyn -L"/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64" -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer -g -I/home/jedlund/local/Linux-x86_64/include -I/home/jedlund/local/Linux-x86_64/include -I/home/jedlund/local/independent/include -I/home/jedlund/local/Linux-x86_64/include -I/home/jedlund/local/Linux-x86_64/include -I/home/jedlund/local/independent/include -Wl,--export-dynamic -L/home/jedlund/local/Linux-x86_64/lib -L/home/jedlund/local/Linux-x86_64/lib gp.o gp_init.o gp_rl.o highlvl.o whatnow.o plotport.o plotnull.o -L/home/jedlund/Downloads/sage-5.3/local/lib -lreadline -L/home/jedlund/Downloads/sage-5.3/local/lib/ -ltermcap -lpari -lm -ldl
> gp.o: In function `what_readline':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp.c:761: undefined reference to `rl_library_version'
> gp_rl.o: In function `change_state':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:115: undefined reference to `rl_save_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:118: undefined reference to `rl_restore_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:115: undefined reference to `rl_save_prompt'
> gp_rl.o: In function `pari_rl_forward_sexp':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:260: undefined reference to `rl_ding'
> gp_rl.o: In function `rl_print_aide':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:528: undefined reference to `rl_save_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:531: undefined reference to `rl_restore_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:528: undefined reference to `rl_save_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:531: undefined reference to `rl_restore_prompt'
> gp_rl.o: In function `change_state':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:115: undefined reference to `rl_save_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:118: undefined reference to `rl_restore_prompt'
> gp_rl.o: In function `pari_rl_complete':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:115: undefined reference to `rl_save_prompt'
> gp_rl.o: In function `treat_single':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:317: undefined reference to `rl_completion_append_character'
> gp_rl.o: In function `pari_completion':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:571: undefined reference to `rl_completion_append_character'
> gp_rl.o: In function `get_matches':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:356: undefined reference to `rl_completion_matches'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:356: undefined reference to `rl_filename_completion_function'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:356: undefined reference to `rl_completion_matches'
> gp_rl.o: In function `pari_completion':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:584: undefined reference to `rl_username_completion_function'
> gp_rl.o: In function `add_space':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:557: undefined reference to `rl_completion_append_character'
> gp_rl.o: In function `get_matches':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:356: undefined reference to `rl_completion_matches'
> gp_rl.o: In function `change_state':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:115: undefined reference to `rl_save_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:118: undefined reference to `rl_restore_prompt'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:115: undefined reference to `rl_save_prompt'
> gp_rl.o: In function `init_readline':
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:762: undefined reference to `vi_movement_keymap'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:763: undefined reference to `vi_movement_keymap'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:769: undefined reference to `vi_movement_keymap'
> /home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64/../src/gp/gp_rl.c:771: undefined reference to `vi_movement_keymap'
> collect2: error: ld returned 1 exit status
> make[3]: *** [gp-dyn] Error 1
> make[3]: Leaving directory `/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64'
> make[2]: *** [gp] Error 2
> make[2]: Leaving directory `/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src'
> Error: Building PARI/GP failed.
>
> Any ideas on how to fix this? I tried running the ubuntu_12.04 binaries, but they don't work on debian wheezy.
Could you attach the PARI log file (as mentioned in the message below
the part you quoted).

[Jeffrey Edlund]

Could you attach the PARI log file (as mentioned in the message below
the part you quoted).

I tried to attach the file, but google groups keeps giving me an error #340 when I try to post the message. We'll see if this message goes through.  Also I found out that the binaries in sage-5.3-linux-64bit-ubuntu_10.04.4_lts-x86_64-Linux work fine on debian wheezy.

Thanks,

Jeffrey

[Jeffrey Edlund]

I could not get the file to attach and post. I have pasted the file below:

pari-2.5.2.p0
====================================================
Extracting package /home/jedlund/Downloads/sage-5.3/spkg/standard/pari-2.5.2.p0.spkg
-rw-r--r-- 1 jedlund jedlund 3374195 Sep  8 05:47 /home/jedlund/Downloads/sage-5.3/spkg/standard/pari-2.5.2.p0.spkg
Finished extraction
****************************************************
Host system:
Linux altair 3.2.0-3-amd64 #1 SMP Mon Jul 23 02:45:17 UTC 2012 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian 4.7.1-7' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --with-arch-32=i586 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.7.1 (Debian 4.7.1-7)
****************************************************
patching file src/language/init.c
patching file config/get_config_options
patching file config/get_dlcflags
patching file config/get_fltk
patching file config/get_ld
patching file config/get_tests
patching file config/get_X11
Hunk #1 succeeded at 29 (offset 1 line).
patching file config/Makefile.SH
patching file src/kernel/gmp/mp.c
patching file misc/tex2mail.in
patching file doc/gphelp.in
============================================================
Configuring PARI/GP without graphics support (for plotting).
If you need it, pass the appropriate option(s) to PARI by
setting and exporting $PARI_EXTRA_OPTS prior to building
Sage (or at least before you build/install the PARI spkg),
e.g. by typing at the shell prompt:
    export PARI_EXTRA_OPTS="--graphic=auto"
or
    export PARI_EXTRA_OPTS="--with-fltk"
Note that PARI doesn't treat it as an error if the requested
graphics library or the corresponding header files are not
found; it will then simply disable graphics support.
Please consult the PARI documentation for further details.
============================================================

To minimize Sage build time and to ensure the best reliability, PARI/GP
will not be tuned for your system. Experience shows tuning can be
unreliable. If you do want to tune PARI/GP, set the environment
variable SAGE_TUNE_pari="yes" by typing the following before building
Sage (or at least before building/installing PARI/GP):
  SAGE_TUNE_pari=yes
  export SAGE_TUNE_pari
If you do this, we strongly recommend to also enable checking. For this,
type the following:
  SAGE_CHECK=yes
  export SAGE_CHECK

Configuring pari-2.5.2 (STABLE) [ development git-b703ee3 ]
Checking echo to see how to suppress newlines...
...using -n.
Looking for some tools first ...
...ld is /usr/bin/ld
...zcat is /bin/zcat
...gzip is /bin/gzip
...ranlib is /usr/bin/ranlib
...perl is /usr/bin/perl
GNU compiler version 4.7.1 (Debian 4.7.1-7)
Given the previous choices, sizeof(long) is 8 chars.
The internal word representation of a double is not needed (64bit).
==========================================================================
Building for: amd64 running linux (x86-64/GMP kernel) 64-bit version
==========================================================================
C compiler is          gcc -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -fPIC
Executable linker is   gcc  -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -Wl,--export-dynamic -L/home/jedlund/local/Linux-x86_64/lib -L/home/jedlund/local/Linux-x86_64/lib
Dynamic Lib linker is  gcc  -shared  $(CFLAGS) $(DLCFLAGS) -Wl,-shared,-soname=$(LIBPARI_SONAME)
Looking in C lib for some symbols...
...Found exp2.
...Found log2.
...Found strftime.
...Found getrusage.
...Found sigaction.
...Found TIOCGWINSZ.
...Found getrlimit.
...Found stat.
...Found vsnprintf.
...Found waitpid.
...Found setsid.
...Found getenv.
...Found isatty.
...Found alarm.
...I did not find dlopen.
Try again, with -ldl this time...
...Found dlopen.
Checking for optional libraries and headers...
...Found libgmp in /home/jedlund/Downloads/sage-5.3/local/lib
...Found gmp header in /home/jedlund/Downloads/sage-5.3/local/include
Using GNU MP, version 5.0.2
Hi-Res Graphics: none
...Found libreadline in /home/jedlund/Downloads/sage-5.3/local/lib
...Found readline header in /home/jedlund/Downloads/sage-5.3/local/include/readline
...Found history header in /home/jedlund/Downloads/sage-5.3/local/include/readline
...Found libtermcap in /home/jedlund/Downloads/sage-5.3/local/lib/
...Library termcap needed by readline
Using GNU readline, version 6.2
Installation prefix ? [/home/jedlund/Downloads/sage-5.3/local]
...for architecture-independent files (share-prefix) ? [/home/jedlund/Downloads/sage-5.3/local/share]
Installation directories for:
...executables (gp, gphelp) ? [/home/jedlund/Downloads/sage-5.3/local/bin]
...libraries (libpari) ? [/home/jedlund/Downloads/sage-5.3/local/lib]
...include files ? [/home/jedlund/Downloads/sage-5.3/local/include]
...manual pages ? [/home/jedlund/Downloads/sage-5.3/local/share/man/man1]
...other system-dependent data ? [/home/jedlund/Downloads/sage-5.3/local/lib/pari]
...other system-independent data ? [/home/jedlund/Downloads/sage-5.3/local/share/pari]
Default is dynamic executable and shared library
==========================================================================
Extracting examples/Makefile.linux-x86_64
Extracting Olinux-x86_64/Makefile
Extracting Makefile
Extracting Olinux-x86_64/paricfg.h
Extracting Olinux-x86_64/../Odos/paricfg.h
Extracting scripts and macros
...in doc
...in misc
==========================================================================
Shall we try to build pari 2.5.2 (development git-b703ee3) now (y/n)? [n]
Ok. Type "make install" when you are ready
Bye !
make[2]: Entering directory `/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src'
Making gp in Olinux-x86_64
make[3]: Entering directory `/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64'
../config/genkernel ../src/kernel/x86_64/asm0.h > parilvl0.h
if test -r ./tune.h; then d=.; else d=../src/kernel/gmp; fi;          cat $d/tune.h ../src/kernel/gmp/int.h ../src/kernel/none/level1.h > parilvl1.h
cat parilvl0.h parilvl1.h > mpinl.h
gcc  -c -I. -I../src/headers -I../src/language -I/home/jedlund/Downloads/sage-5.3/local/include -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o gp.o ../src/gp/gp.c
gcc  -c -I. -I../src/headers -I../src/graph -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o gp_init.o ../src/gp/gp_init.c
gcc  -c -I. -I../src/headers -I../src/language -I/home/jedlund/Downloads/sage-5.3/local/include -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o gp_rl.o ../src/gp/gp_rl.c
gcc  -c -I. -I../src/headers -DDL_DFLT_NAME=NULL -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o highlvl.o ../src/gp/highlvl.c
gcc  -c -I. -I../src/headers -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o whatnow.o ../src/gp/whatnow.c
gcc  -c -I. -I../src/headers -I../src/graph -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o plotport.o ../src/graph/plotport.c
gcc  -c -I. -I../src/headers  -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o plotnull.o ../src/graph/plotnull.c
cat ../src/kernel/gmp/mp.c ../src/kernel/none/cmp.c ../src/kernel/none/gcdll.c ../src/kernel/none/ratlift.c  ../src/kernel/none/invmod.c ../src/kernel/gmp/gcd.c ../src/kernel/gmp/gcdext.c ../src/kernel/none/mp_indep.c ../src/kernel/none/add.c > mp.c
gcc  -c -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -funroll-loops -fPIC -I. -I../src/headers -I/home/jedlund/Downloads/sage-5.3/local/include -o mp.o mp.c
gcc  -c -I. -I../src/headers -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -fPIC -o mpinl.o ../src/kernel/none/mpinl.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o F2x.o ../src/basemath/F2x.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o FF.o ../src/basemath/FF.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o Flx.o ../src/basemath/Flx.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o FpE.o ../src/basemath/FpE.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o FpV.o ../src/basemath/FpV.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o FpX.o ../src/basemath/FpX.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o Hensel.o ../src/basemath/Hensel.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o QX_factor.o ../src/basemath/QX_factor.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o Qfb.o ../src/basemath/Qfb.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o RgV.o ../src/basemath/RgV.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o RgX.o ../src/basemath/RgX.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o ZV.o ../src/basemath/ZV.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o ZX.o ../src/basemath/ZX.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o alglin1.o ../src/basemath/alglin1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o alglin2.o ../src/basemath/alglin2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o arith1.o ../src/basemath/arith1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o arith2.o ../src/basemath/arith2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o base1.o ../src/basemath/base1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o base2.o ../src/basemath/base2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o base3.o ../src/basemath/base3.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o base4.o ../src/basemath/base4.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o base5.o ../src/basemath/base5.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o bb_group.o ../src/basemath/bb_group.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o bibli1.o ../src/basemath/bibli1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o bibli2.o ../src/basemath/bibli2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o bit.o ../src/basemath/bit.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o buch1.o ../src/basemath/buch1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o buch2.o ../src/basemath/buch2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o buch3.o ../src/basemath/buch3.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o buch4.o ../src/basemath/buch4.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o concat.o ../src/basemath/concat.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o ellanal.o ../src/basemath/ellanal.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o elliptic.o ../src/basemath/elliptic.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o galconj.o ../src/basemath/galconj.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o gen1.o ../src/basemath/gen1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o gen2.o ../src/basemath/gen2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o gen3.o ../src/basemath/gen3.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o hnf_snf.o ../src/basemath/hnf_snf.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o ifactor1.o ../src/basemath/ifactor1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o lll.o ../src/basemath/lll.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o nffactor.o ../src/basemath/nffactor.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o perm.o ../src/basemath/perm.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o polarit1.o ../src/basemath/polarit1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o polarit2.o ../src/basemath/polarit2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o polarit3.o ../src/basemath/polarit3.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o prime.o ../src/basemath/prime.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o random.o ../src/basemath/random.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o rootpol.o ../src/basemath/rootpol.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o subcyclo.o ../src/basemath/subcyclo.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o subgroup.o ../src/basemath/subgroup.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o trans1.o ../src/basemath/trans1.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o trans2.o ../src/basemath/trans2.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o trans3.o ../src/basemath/trans3.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o anal.o ../src/language/anal.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o compat.o ../src/language/compat.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o compile.o ../src/language/compile.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o default.o ../src/language/default.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o errmsg.o ../src/language/errmsg.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o es.o ../src/language/es.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o eval.o ../src/language/eval.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o hash.o ../src/language/hash.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o init.o ../src/language/init.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o intnum.o ../src/language/intnum.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o members.o ../src/language/members.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o paricfg.o ../src/language/paricfg.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o pariinl.o ../src/language/pariinl.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o parse.o ../src/language/parse.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o sumiter.o ../src/language/sumiter.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o DedekZeta.o ../src/modules/DedekZeta.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o aprcl.o ../src/modules/aprcl.c
../src/modules/aprcl.c: In function 'step4b':
../src/modules/aprcl.c:835:6: warning: 'j3q' may be used uninitialized in this function [-Wmaybe-uninitialized]
../src/modules/aprcl.c:837:21: warning: 'j2q' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o elldata.o ../src/modules/elldata.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o ellsea.o ../src/modules/ellsea.c
../src/modules/ellsea.c: In function 'ellmodulareqn':
../src/modules/ellsea.c:108:14: warning: 'meqn.eq' may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from ../src/headers/pari.h:59:0,
                 from ../src/modules/ellsea.c:33:
../src/kernel/none/level1.h:227:6: warning: 'meqn.type' may be used uninitialized in this function [-Wmaybe-uninitialized]
../src/modules/ellsea.c:97:15: note: 'meqn.type' was declared here
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o galois.o ../src/modules/galois.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o galpol.o ../src/modules/galpol.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o groupid.o ../src/modules/groupid.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o krasner.o ../src/modules/krasner.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o kummer.o ../src/modules/kummer.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o mpqs.o ../src/modules/mpqs.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o part.o ../src/modules/part.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o stark.o ../src/modules/stark.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o subfield.o ../src/modules/subfield.c
gcc  -c -I. -I../src/headers -fPIC -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -o thue.o ../src/modules/thue.c
rm -f libpari-gmp.so.2.5.2
gcc  -o "/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64"/libpari-gmp.so.2.5.2 -shared  -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -fPIC -Wl,-shared,-soname=libpari-gmp.so.3  mp.o mpinl.o F2x.o FF.o Flx.o FpE.o FpV.o FpX.o Hensel.o QX_factor.o Qfb.o RgV.o RgX.o ZV.o ZX.o alglin1.o alglin2.o arith1.o arith2.o base1.o base2.o base3.o base4.o base5.o bb_group.o bibli1.o bibli2.o bit.o buch1.o buch2.o buch3.o buch4.o concat.o ellanal.o elliptic.o galconj.o gen1.o gen2.o gen3.o hnf_snf.o ifactor1.o lll.o nffactor.o perm.o polarit1.o polarit2.o polarit3.o prime.o random.o rootpol.o subcyclo.o subgroup.o trans1.o trans2.o trans3.o anal.o compat.o compile.o default.o errmsg.o es.o eval.o hash.o init.o intnum.o members.o paricfg.o pariinl.o parse.o sumiter.o DedekZeta.o aprcl.o elldata.o ellsea.o galois.o galpol.o groupid.o krasner.o kummer.o mpqs.o part.o stark.o subfield.o thue.o -lc -lm -L/home/jedlund/Downloads/sage-5.3/local/lib -lgmp
if test "libpari-gmp.so.2.5.2" != "libpari.so"; then       rm -f libpari.so;      ln -s libpari-gmp.so.2.5.2 libpari.so; fi
if test "libpari-gmp.so.2.5.2" != "libpari-gmp.so.3"; then       rm -f libpari-gmp.so.3;      ln -s libpari-gmp.so.2.5.2 libpari-gmp.so.3; fi
rm -f gp-dyn
gcc  -o gp-dyn -L"/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0/src/Olinux-x86_64" -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer  -g   -Wl,--export-dynamic -L/home/jedlund/local/Linux-x86_64/lib -L/home/jedlund/local/Linux-x86_64/lib gp.o gp_init.o gp_rl.o highlvl.o whatnow.o plotport.o plotnull.o  -L/home/jedlund/Downloads/sage-5.3/local/lib -lreadline -L/home/jedlund/Downloads/sage-5.3/local/lib/ -ltermcap -lpari  -lm -ldl

real    2m5.709s
user    1m57.523s
sys    0m3.284s
************************************************************************
Error installing package pari-2.5.2.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
  /home/jedlund/Downloads/sage-5.3/spkg/logs/pari-2.5.2.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0 and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
  (cd '/home/jedlund/Downloads/sage-5.3/spkg/build/pari-2.5.2.p0' && '/home/jedlund/Downloads/sage-5.3/sage' -sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************