Sage 4.1.2.alpha1 released

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Minh Nguyen

unread,
Sep 7, 2009, 6:36:09 PM9/7/09
to sage-...@googlegroups.com, sage-release
Hi folks,

This release has the following updated packages:

* matplotlib-0.99.0.spkg
* networkx-0.99.p1-fake_really-0.36.p1.spkg

The source tarball and sage.math binary are available at

http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1.tar
http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1-sage.math.washington.edu-x86_64-Linux.tar.gz

and the upgrade path is

http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1/

Please test and report all problems.

The following tickets were confirmed as been fixed in Sage 4.1.2.alpha0:

#4566: speed up assume command (easy change) [confirmed as fixed in
Sage 4.1.2.alpha0]
#6884: notebook doctest failures in Sage 4.1.2.alpha0 on mod.math
[confirmed as fixed in Sage 4.1.2.alpha0]

The following tickets were merged in Sage 4.1.2.alpha1:

#4552: Timothy Clemans: notebook -- when email system on, registration
is broken [Reviewed by Willem Jan Palenstijn]
#5448: Jason Grout: rework save/show in plot, use Matplotlib's axes
code, upgrade matplotlib [Reviewed by Karl-Dieter Crisman]
#6388: Karl-Dieter Crisman: Logarithm function log(x) is partially
broken for x <= 0 [Reviewed by Golam Mortuza Hossain]
#6839: Anne Schilling, Brant Jones: Implementation of crystal of
letters for type E7 [Reviewed by Daniel Bump]
#6857: Robert Miller: in automorphism_group, orbits=True does not
translate vertices back [Reviewed by Nathann Cohen]
#6896: joskarsson: update README.txt about GCC versions [Reviewed by
William Stein]

--
Regards
Minh Van Nguyen

Minh Nguyen

unread,
Sep 7, 2009, 8:45:33 PM9/7/09
to sage-...@googlegroups.com
Hi folks,

On Tue, Sep 8, 2009 at 8:36 AM, Minh Nguyen<nguye...@gmail.com> wrote:
> Hi folks,
>
> This release has the following updated packages:
>
> * matplotlib-0.99.0.spkg
> * networkx-0.99.p1-fake_really-0.36.p1.spkg
>
> The source tarball and sage.math binary are available at

You can also test the alpha version of the notebook at

http://alpha.sagenb.org/

which runs Sage 4.1.2.alpha1. Do not save important information on
that alpha notebook.

Kevin Horton

unread,
Sep 8, 2009, 6:20:15 AM9/8/09
to sage-...@googlegroups.com
It built OK on Ubuntu 8.10 on Intel.

The following tests failed:


sage -t -long "devel/sage/sage/interfaces/sage0.py"
sage -t -long "devel/sage/sage/interfaces/expect.py"
sage -t -long "devel/sage/sage/misc/randstate.pyx"

Details:

sage -t -long "devel/sage/sage/interfaces/sage0.py"
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 55:
sage: a^3
Expected:
8
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 62:
sage: V.gens()
Expected:
((1, 0, 0, 0), (0, 1, 0, 0), (0, 0, 1, 0), (0, 0, 0, 1))
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 75:
sage: g = V.0; g
Expected:
(1, 0, 0, 0)
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 85:
sage: s('%s.parent()'%g.name())
Expected:
Vector space of dimension 4 over Rational Field
Got:
(1, 0, 0, 0)
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 93:
sage: s('x = 5')
Expected:
5
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 97:
sage: s('x')
Expected:
5
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 105:
sage: a
Expected:
10
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 114:
sage: s3('"x"')
Expected:
8
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 116:
sage: s('x')
Expected:
5
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 320:
sage: sage0.eval('2+2')
Expected:
'4'
Got:
'\x1b[0m'
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 334:
sage: sage0.get('x')
Expected:
'2'
Got:
'4'
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 364:
sage: sage0.get('x')
Expected:
"...NameError: name 'x' is not defined"
Got:
'2'
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 373:
sage: sage0._contains('2', 'QQ')
Expected:
True
Got:
False
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 397:
sage: sage0.version()
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_16[2]>", line 1, in <module>
sage0.version()###line 397:
sage: sage0.version()
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/sage0.py", line 402, in version
return sage0_version()
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/sage0.py", line 547, in sage0_version
return str(sage0('version()'))
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/sage0.py", line 263, in __call__
return SageElement(self, x)
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/expect.py", line 1433, in __init__
raise TypeError, x
TypeError: Error executing code in Sage
CODE:
sage0=version()
Sage ERROR:

---------------------------------------------------------------------------
NameError Traceback (most recent
call last)

/home/kwh/.sage/temp/jeos/18021/_home_kwh__sage_init_sage_0.py in
<module>()

NameError: name 'x' is not defined
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 399:
sage: sage0.version() == version()
Expected:
True
Got:
False
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 417:
sage: sage0.new(2)
Expected:
2
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 445:
sage: F == sage0(F)._sage_()
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_20[4]>", line 1, in <module>
F == sage0(F)._sage_()###line 445:
sage: F == sage0(F)._sage_()
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/sage0.py", line 455, in _sage_
return load(P._local_tmpfile())
File "sage_object.pyx", line 529, in
sage.structure.sage_object.load (sage/structure/sage_object.c:6504)
IOError: [Errno 2] No such file or directory: '/home/kwh/.sage//
temp/jeos/17843//interface//tmp17843.sobj'
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 463:
sage: four_gcd(6)
Expected:
2
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 486:
sage: sage0(4).gcd
Expected:
<built-in method gcd of sage.rings.integer.Integer object at 0x...>
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 512:
sage: half = reduce_load_element(s); half
Expected:
1/2
Got:
<BLANKLINE>
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 544:
sage: sage0_version() == version()
Expected:
True
Got:
False
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 174:
sage: print "ignore this"; sage0.cputime() # random output
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_3[2]>", line 1, in <module>
print "ignore this"; sage0.cputime() # random
output###line 174:
sage: print "ignore this"; sage0.cputime() # random output
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/sage0.py", line 185, in cputime
return float(s)
ValueError: invalid literal for float(): Sage Version
4.1.2.alpha1, Release Date: 2009-09-07
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 176:
sage: sage0('factor(2^157-1)')
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_3[3]>", line 1, in <module>
sage0('factor(2^157-1)')###line 176:
sage: sage0('factor(2^157-1)')
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/expect.py", line 1592, in __repr__
s = s.replace(self._name, self.__dict__['__custom_name'])
KeyError: '__custom_name'
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 178:
sage: print "ignore this"; sage0.cputime() # random output
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_3[4]>", line 1, in <module>
print "ignore this"; sage0.cputime() # random
output###line 178:
sage: print "ignore this"; sage0.cputime() # random output
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/sage0.py", line 185, in cputime
return float(s)
ValueError: empty string for float()
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 192:
sage: len(t) > 100
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_4[3]>", line 1, in <module>
len(t) > Integer(100)###line 192:
sage: len(t) > 100
TypeError: object of type 'float' has no len()
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 194:
sage: 'gcd' in t
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_4[4]>", line 1, in <module>
'gcd' in t###line 194:
sage: 'gcd' in t
TypeError: argument of type 'float' is not iterable
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/sage0.py",
line 204:
sage: s.eval('2+2')
Expected:
'4'
Got:
'\x1b[0m'
**********************************************************************


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========================================================================
sage -t -long "devel/sage/sage/interfaces/expect.py"
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/interfaces/expect.py",
line 805:
sage: print sage0.eval("alarm(1); singular._expect_expr('1')")
Expected:
Control-C pressed. Interrupting Singular. Please wait a few
seconds...
...
KeyboardInterrupt: computation timed out because alarm was set
for 1 seconds
Got:
[0m
**********************************************************************

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========================================================================

sage -t -long "devel/sage/sage/misc/randstate.pyx"
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/misc/randstate.pyx", line
124:
: s = ZZ(subsage('initial_seed()'))
Exception raised:
Traceback (most recent call last):
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1231, in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/sagedoctest.py", line
38, in run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/opt/sage-4.1.2.alpha1/local/bin/ncadoctest.py", line
1172, in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_0[32]>", line 1, in <module>
s = ZZ(subsage('initial_seed()'))###line 124:
: s = ZZ(subsage('initial_seed()'))
File "parent.pyx", line 323, in
sage.structure.parent.Parent.__call__ (sage/structure/parent.c:4171)
File "coerce_maps.pyx", line 156, in
sage.structure.coerce_maps.NamedConvertMap._call_ (sage/structure/
coerce_maps.c:4064)
File "/opt/sage-4.1.2.alpha1/local/lib/python/site-packages/
sage/interfaces/expect.py", line 1726, in _integer_
return sage.rings.all.Integer(repr(self))
File "integer.pyx", line 564, in
sage.rings.integer.Integer.__init__ (sage/rings/integer.c:6399)
TypeError: unable to convert x
(=
---------------------------------------------------------------------------
AttributeError Traceback (most recent
call last)

/home/kwh/.sage/temp/jeos/27582/_home_kwh__sage_init_sage_0.py in
<module>()

/opt/sage-4.1.2.alpha1/local/lib/python2.6/site-packages/sage/
misc/functional.pyc in gen(x)
353 Return the generator of x.
354 """
--> 355 return x.gen()
356
357 def gens(x):

AttributeError: 'int' object has no attribute 'gen') to an integer
**********************************************************************
File "/opt/sage-4.1.2.alpha1/devel/sage/sage/misc/randstate.pyx", line
131:
: r == ZZ.random_element(2^200)
Expected:
True
Got:
False
**********************************************************************


--
Kevin Horton
Ottawa, Canada

Minh Nguyen

unread,
Sep 8, 2009, 6:36:31 AM9/8/09
to sage-...@googlegroups.com
Hi Kevin,

On Tue, Sep 8, 2009 at 8:20 PM, Kevin Horton<khor...@rogers.com> wrote:
>
> It built OK on Ubuntu 8.10 on Intel.
>
> The following tests failed:
>
>
> sage -t -long "devel/sage/sage/interfaces/sage0.py"
> sage -t -long "devel/sage/sage/interfaces/expect.py"
> sage -t -long "devel/sage/sage/misc/randstate.pyx"

Out of curiosity: did you upgrade from Sage 4.1.2.alpha0 to
4.1.2.alph1? If not, then from which version did you upgrade to
4.1.2.alpha1? Or did you download the source of 4.1.2.alpha1 and
compile it?

Kevin Horton

unread,
Sep 8, 2009, 8:01:46 AM9/8/09
to sage-devel
On Sep 8, 6:36 am, Minh Nguyen <nguyenmi...@gmail.com> wrote:
> Hi Kevin,
>
> On Tue, Sep 8, 2009 at 8:20 PM, Kevin Horton<khorto...@rogers.com> wrote:
>
> > It built OK on Ubuntu 8.10 on Intel.
>
> > The following tests failed:
>
> >        sage -t -long "devel/sage/sage/interfaces/sage0.py"
> >        sage -t -long "devel/sage/sage/interfaces/expect.py"
> >        sage -t -long "devel/sage/sage/misc/randstate.pyx"
>
> Out of curiosity: did you upgrade from Sage 4.1.2.alpha0 to
> 4.1.2.alph1? If not, then from which version did you upgrade to
> 4.1.2.alpha1? Or did you download the source of 4.1.2.alpha1 and
> compile it?
>

I downloaded the source and built it from scratch.

Kevin Horton

John H Palmieri

unread,
Sep 8, 2009, 11:02:34 AM9/8/09
to sage-devel
On Sep 7, 3:36 pm, Minh Nguyen <nguyenmi...@gmail.com> wrote:
> Hi folks,
>
> This release has the following updated packages:
>
> * matplotlib-0.99.0.spkg
> * networkx-0.99.p1-fake_really-0.36.p1.spkg
>
> The source tarball and sage.math binary are available at
>
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2...http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2...
>
> and the upgrade path is
>
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2...
>
> Please test and report all problems.

Intel Mac OS X 10.5, 32-bit, built from scratch: the build failed when
it got to ecl. After replacing the included ecl spkg with the one at

http://sage.math.washington.edu/home/kirkby/Solaris-fixes/ecl-9.8.4.p0-5th-attempt/ecl-9.8.4.p0.spkg

the build succeeded and all tests passed.

Intel Mac OS X 10.5, 64-bit, built from scratch: replacing the fortran
spkg (as usual) and the ecl spkg, it built, although apparently the
ecl library is not 64-bit. A bunch of tests failed because of the
cliquer problem. Other than that, one failure:

sage -t -long "devel/sage/sage/interfaces/maxima.py"
**********************************************************************
File "/Applications/sage_builds/sage-4.1.2.alpha1-64bit/devel/sage/
sage/interfaces/maxima.py", line 2108:
sage: list(v)
Expected:
[0, x, 2*x^2, 3*x^3, 4*x^4, 5*x^5]
Got:
[0, x, , 3*x^3, 4*x^4, 5*x^5]
**********************************************************************
1 items had failures:
1 of 4 in __main__.example_64

I suppose this is related to ecl?

John

Jaap Spies

unread,
Sep 10, 2009, 3:08:44 PM9/10/09
to sage-...@googlegroups.com
Minh Nguyen wrote:
> Hi folks,
>
> This release has the following updated packages:
>
> * matplotlib-0.99.0.spkg
> * networkx-0.99.p1-fake_really-0.36.p1.spkg
>
> The source tarball and sage.math binary are available at
>
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1.tar
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1-sage.math.washington.edu-x86_64-Linux.tar.gz
>
> and the upgrade path is
>
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1/
>
> Please test and report all problems.
>


Build fails on Fedora 11, 32 bit:

gcc -c -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. -I../src/headers -o base3.o ../src/basemath/base3.c
gcc: Internal error: Killed (program cc1)
Please submit a full bug report.
See <http://bugzilla.redhat.com/bugzilla> for instructions.
make[3]: *** [base3.o] Error 1
make[3]: Leaving directory `/home/jaap/downloads/sage-4.1.2.alpha1/spkg/build/pari-2.3.3.p1/src/Olinux-i686'
make[2]: *** [gp] Error 2
make[2]: Leaving directory `/home/jaap/downloads/sage-4.1.2.alpha1/spkg/build/pari-2.3.3.p1/src'
Error building GP

real 39m28.715s
user 33m51.974s
sys 0m49.441s
sage: An error occurred while installing pari-2.3.3.p1
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /home/jaap/downloads/sage-4.1.2.alpha1/install.log. Describe your computer, operating system, etc.
If you want to try to fix the problem, yourself *don't* just cd to
/home/jaap/downloads/sage-4.1.2.alpha1/spkg/build/pari-2.3.3.p1 and type 'make'.
Instead type "/home/jaap/downloads/sage-4.1.2.alpha1/sage -sh"
in order to set all environment variables correctly, then cd to
/home/jaap/downloads/sage-4.1.2.alpha1/spkg/build/pari-2.3.3.p1
(When you are done debugging, you can type "exit" to leave the
subshell.)
make[1]: *** [installed/pari-2.3.3.p1] Error 1
make[1]: Leaving directory `/home/jaap/downloads/sage-4.1.2.alpha1/spkg'

real 62m21.456s
user 47m13.197s
sys 6m29.637s
Error building Sage.
[jaap@paix sage-4.1.2.alpha1]$

[jaap@paix sage-4.1.2.alpha1]$ gcc -v
Using built-in specs.
Target: i586-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla
--enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions
--enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch=i586 --build=i586-redhat-linux
Thread model: posix
gcc version 4.4.1 20090725 (Red Hat 4.4.1-2) (GCC)


[jaap@paix sage-4.1.2.alpha1]$ uname -a
Linux paix 2.6.29.6-217.2.16.fc11.i686.PAE #1 SMP Mon Aug 24 17:16:21 EDT 2009 i686 i686 i386 GNU/Linux


Jaap

William Stein

unread,
Sep 10, 2009, 3:33:26 PM9/10/09
to sage-...@googlegroups.com
On Thu, Sep 10, 2009 at 12:08 PM, Jaap Spies <j.s...@hccnet.nl> wrote:
>
> Minh Nguyen wrote:
>> Hi folks,
>>
>> This release has the following updated packages:
>>
>> * matplotlib-0.99.0.spkg
>> * networkx-0.99.p1-fake_really-0.36.p1.spkg
>>
>> The source tarball and sage.math binary are available at
>>
>> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1.tar
>> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1-sage.math.washington.edu-x86_64-Linux.tar.gz
>>
>> and the upgrade path is
>>
>> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1/
>>
>> Please test and report all problems.
>>
>
>
> Build fails on Fedora 11, 32 bit:
>
> gcc  -c -O3 -Wall -fno-strict-aliasing -fomit-frame-pointer    -I. -I../src/headers  -o base3.o ../src/basemath/base3.c
> gcc: Internal error: Killed (program cc1)

This is a bug in GCC. It's been reported to the GCC developers by the
PARI developers and they recently fixed it, but haven't released the
fix. You'll have to either build PARI without optimizations or use an
older compiler.

Or maybe we should find a workaround, e.g., not build that one file
with optimizations? I'm definitely +1 to somebody making a hackish
workaround since those broken GCC's are going to be widely deployed
for years.

Thoughts?

William
--
William Stein
Associate Professor of Mathematics
University of Washington
http://wstein.org

Jaap Spies

unread,
Sep 11, 2009, 5:00:32 AM9/11/09
to sage-...@googlegroups.com

Changing O3 to O1 in src/config/get_cc did the job.
After a 'touch spkg/installed/pari-2.3.3.p1' the buid goes on.


Jaap


> William
>

Jaap Spies

unread,
Sep 11, 2009, 2:36:45 PM9/11/09
to sage-...@googlegroups.com

OK, it builds well, and:
----------------------------------------------------------------------
All tests passed!


Jaap

David Joyner

unread,
Sep 15, 2009, 6:01:58 AM9/15/09
to sage-...@googlegroups.com
Sorry for the late report but sage finally compiles and runs on ubuntu karmic.
sage -testall passes except for
sage -t "devel/sage/sage/server/simple/twist.py"
However, re-runnig this test, I got an "All tests passed!", so
it looks like there are no problems now with ubuntu 9.10.


On Mon, Sep 7, 2009 at 6:36 PM, Minh Nguyen <nguye...@gmail.com> wrote:
>
> Hi folks,
>
> This release has the following updated packages:
>
> * matplotlib-0.99.0.spkg
> * networkx-0.99.p1-fake_really-0.36.p1.spkg
>
> The source tarball and sage.math binary are available at
>
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1.tar
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1-sage.math.washington.edu-x86_64-Linux.tar.gz
>
> and the upgrade path is
>
> http://sage.math.washington.edu/home/mvngu/release/upgrade/sage-4.1.2.alpha1/
>
> Please test and report all problems.
>

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