Error building v4.3.1 on Fedora 12 (32-bit)
gsever
Am I getting the similar error of FC12 (i686) binaries not pushed in
the download section?
[gsever@ccn sage-4.3.1]$ uname -a
Linux ccn 2.6.31.9-174.fc12.i686.PAE #1 SMP Mon Dec 21 06:04:56 UTC
2009 i686 i686 i386 GNU/Linux
[gsever@ccn sage-4.3.1]$ cat /proc/cpuinfo
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 23
model name : Intel(R) Core(TM)2 Duo CPU T9300 @ 2.50GHz
stepping : 6
cpu MHz : 2500.000
cache size : 6144 KB
physical id : 0
siblings : 2
core id : 0
cpu cores : 2
apicid : 0
initial apicid : 0
fdiv_bug : no
hlt_bug : no
f00f_bug : no
coma_bug : no
fpu : yes
fpu_exception : yes
cpuid level : 10
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe nx lm
constant_tsc arch_perfmon pebs bts pni dtes64 monitor ds_cpl vmx est
tm2 ssse3 cx16 xtpr pdcm sse4_1 lahf_lm ida tpr_shadow vnmi
flexpriority
bogomips : 4986.77
clflush size : 64
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 23
model name : Intel(R) Core(TM)2 Duo CPU T9300 @ 2.50GHz
stepping : 6
cpu MHz : 800.000
cache size : 6144 KB
physical id : 0
siblings : 2
core id : 1
cpu cores : 2
apicid : 1
initial apicid : 1
fdiv_bug : no
hlt_bug : no
f00f_bug : no
coma_bug : no
fpu : yes
fpu_exception : yes
cpuid level : 10
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe nx lm
constant_tsc arch_perfmon pebs bts pni dtes64 monitor ds_cpl vmx est
tm2 ssse3 cx16 xtpr pdcm sse4_1 lahf_lm ida tpr_shadow vnmi
flexpriority
bogomips : 4986.03
clflush size : 64
power management:
Successfully installed r-2.9.2
Running the test suite.
make[2]: Entering directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src'
make[3]: Entering directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src/tests'
make[4]: Entering directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src/tests'
make[4]: warning: -jN forced in submake: disabling jobserver mode.
make[5]: Entering directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src/tests/Examples'
make[5]: warning: -jN forced in submake: disabling jobserver mode.
Collecting examples for package ‘base’
Running examples in package ‘base’
Collecting examples for package ‘tools’
Running examples in package ‘tools’
Collecting examples for package ‘utils’
Running examples in package ‘utils’
Error: testing 'utils' failed
Execution halted
make[5]: *** [test-Examples-Base] Error 1
make[5]: Leaving directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src/tests/Examples'
make[4]: *** [test-Examples] Error 2
make[4]: Leaving directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src/tests'
make[3]: *** [test-all-basics] Error 1
make[3]: Leaving directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src/tests'
make[2]: *** [check] Error 2
make[2]: Leaving directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg/build/r-2.9.2/src'
Error while running the R testsuite ... exiting
*************************************
Error testing package ** r-2.9.2 **
*************************************
sage: An error occurred while testing r-2.9.2
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /home/gsever/Desktop/python-repo/sage-4.3.1/install.log. Describe
your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/gsever/Desktop/python-repo/sage-4.3.1/spkg/build/r-2.9.2 and
type 'make check' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/gsever/Desktop/python-repo/sage-4.3.1/spkg/build/r-2.9.2'
&& '/home/gsever/Desktop/python-repo/sage-4.3.1/sage' -sh)
When you are done debugging, you can type "exit" to leave the
subshell.
make[1]: *** [installed/r-2.9.2] Error 1
make[1]: Leaving directory `/home/gsever/Desktop/python-repo/
sage-4.3.1/spkg'
real 124m58.197s
user 125m3.126s
sys 11m14.695s
Error building Sage.
Gokhan Sever
> Please email sage-develhttp://groups.google.com/group/sage-devel
> explaining the problem and send the relevant part of
> of /home/gsever/Desktop/python-repo/sage-4.3.1/install.log. Describe
> your computer, operating system, etc.
> If you want to try to fix the problem yourself, *don't* just cd to
> /home/gsever/Desktop/python-repo/sage-4.3.1/spkg/build/r-2.9.2 and
> type 'make check' or whatever is appropriate.
> Instead, the following commands setup all environment variables
> correctly and load a subshell for you to debug the error:
> (cd '/home/gsever/Desktop/python-repo/sage-4.3.1/spkg/build/r-2.9.2'
> && '/home/gsever/Desktop/python-repo/sage-4.3.1/sage' -sh)
> When you are done debugging, you can type "exit" to leave the
> subshell.
> make[1]: *** [installed/r-2.9.2] Error 1
> make[1]: Leaving directory `/home/gsever/Desktop/python-repo/
> sage-4.3.1/spkg'
>
> real 124m58.197s
> user 125m3.126s
> sys 11m14.695s
> Error building Sage.
Testing sage-4.3.2.rc0 with export SAGE_CHECK="yes" yields a different
set of errors this time:
Successfully installed pyprocessing-0.52.p0
Running the test suite.
/home/gsever/Desktop/python-repo/sage-4.3.2.rc0/local/bin/python:
processing.tests is a package and cannot be directly executed
*************************************
Error testing package ** pyprocessing-0.52.p0 **
*************************************
sage: An error occurred while testing pyprocessing-0.52.p0
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /home/gsever/Desktop/python-repo/sage-4.3.2.rc0/install.log.
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/gsever/Desktop/python-repo/sage-4.3.2.rc0/spkg/build/
pyprocessing-0.52.p0 and type 'make check' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/gsever/Desktop/python-repo/sage-4.3.2.rc0/spkg/build/
pyprocessing-0.52.p0' && '/home/gsever/Desktop/python-repo/
sage-4.3.2.rc0/sage' -sh)
When you are done debugging, you can type "exit" to leave the
subshell.
make[1]: *** [installed/pyprocessing-0.52.p0] Error 1
make[1]: Leaving directory `/home/gsever/Desktop/python-repo/
sage-4.3.2.rc0/spkg'
real 117m40.871s
user 113m41.865s
sys 10m53.131s
Error building Sage.
Jaap Spies
OK, pyprocessing is in principle out iirc.
Are you building with SAGE_CHECK = something non empty?
I think this will fail not only here.
I would do a unset SAGE_CHECK,
and try again.
Jaap
Gokhan Sever
> > of /home/gsever/Desktop/python-repo/sage-4.3.2.rc0/install.log.
> > Describe your computer, operating system, etc.
> > If you want to try to fix the problem yourself, *don't* just cd to
> > /home/gsever/Desktop/python-repo/sage-4.3.2.rc0/spkg/build/
> > pyprocessing-0.52.p0 and type 'make check' or whatever is appropriate.
> > Instead, the following commands setup all environment variables
> > correctly and load a subshell for you to debug the error:
> > (cd '/home/gsever/Desktop/python-repo/sage-4.3.2.rc0/spkg/build/
> > pyprocessing-0.52.p0'&& '/home/gsever/Desktop/python-repo/
> > sage-4.3.2.rc0/sage' -sh)
> > When you are done debugging, you can type "exit" to leave the
> > subshell.
> > make[1]: *** [installed/pyprocessing-0.52.p0] Error 1
> > make[1]: Leaving directory `/home/gsever/Desktop/python-repo/
> > sage-4.3.2.rc0/spkg'
>
> > real 117m40.871s
> > user 113m41.865s
> > sys 10m53.131s
> > Error building Sage.
Running "make test" this time. I will update once its done.
Gokhan Sever
The following tests failed:
sage -t "devel/sage/sage/modules/free_module.py" # Segfault
sage -t "devel/sage/sage/coding/code_constructions.py" # Segfault
sage -t "devel/sage/sage/coding/linear_code.py" # Segfault
sage -t "devel/sage/sage/groups/generic.py" # Segfault
sage -t "devel/sage/sage/modular/ssmod/ssmod.py" # Segfault
sage -t "devel/sage/sage/modular/modform/ambient.py" # Segfault
sage -t "devel/sage/sage/modular/modsym/space.py" # Segfault
sage -t "devel/sage/sage/modular/modsym/modsym.py" # Segfault
sage -t "devel/sage/sage/matrix/matrix_sparse.pyx" # Segfault
sage -t "devel/sage/sage/matrix/matrix2.pyx" # Segfault
sage -t "devel/sage/sage/matrix/matrix_space.py" # Segfault
sage -t "devel/sage/sage/geometry/polyhedra.py"
sage -t "devel/sage/sage/geometry/lattice_polytope.py"
sage -t "devel/sage/sage/combinat/posets/posets.py"
sage -t "devel/sage/sage/combinat/posets/hasse_diagram.py"
sage -t "devel/sage/sage/combinat/words/suffix_trees.py"
sage -t "devel/sage/sage/combinat/words/word.py"
sage -t "devel/sage/sage/combinat/yang_baxter_graph.py"
sage -t "devel/sage/sage/combinat/crystals/letters.py"
sage -t "devel/sage/sage/combinat/crystals/crystals.py"
sage -t "devel/sage/sage/rings/polynomial/
polynomial_quotient_ring_element.py" # Segfault
sage -t "devel/sage/sage/rings/finite_field_ntl_gf2e.pyx" # Segfault
sage -t "devel/sage/sage/rings/number_field/number_field.py" #
Segfault
sage -t "devel/sage/sage/rings/number_field/number_field_rel.py" #
Segfault
sage -t "devel/sage/sage/rings/finite_field_morphism.py" # Segfault
sage -t "devel/sage/sage/rings/finite_field_ext_pari.py" # Segfault
sage -t "devel/sage/sage/plot/plot.py"
sage -t "devel/sage/sage/plot/colors.py"
sage -t "devel/sage/sage/plot/scatter_plot.py"
sage -t "devel/sage/sage/tests/benchmark.py" # Segfault
sage -t "devel/sage/sage/misc/functional.py"
sage -t "devel/sage/sage/schemes/elliptic_curves/
ell_rational_field.py"
sage -t "devel/sage/sage/schemes/elliptic_curves/
ell_finite_field.py" # Segfault
sage -t "devel/sage/sage/schemes/elliptic_curves/ell_point.py" #
Segfault
sage -t "devel/sage/sage/schemes/hyperelliptic_curves/
hyperelliptic_finite_field.py" # Segfault
sage -t "devel/sage/sage/schemes/hyperelliptic_curves/
hyperelliptic_generic.py" # Segfault
sage -t "devel/sage/sage/graphs/graph.py"
sage -t "devel/sage/sage/graphs/graph_plot.py"
sage -t "devel/sage/sage/graphs/digraph.py"
sage -t "devel/sage/sage/graphs/cliquer.pyx"
sage -t "devel/sage/sage/graphs/generic_graph.py"
sage -t "devel/sage/sage/graphs/graph_list.py"
sage -t "devel/sage/sage/graphs/graph_bundle.py"
sage -t "devel/sage/sage/graphs/bipartite_graph.py"
sage -t "devel/sage/sage/categories/finite_coxeter_groups.py"
sage -t "devel/sage/sage/categories/coxeter_groups.py"
sage -t "devel/sage/sage/categories/category.py"
sage -t "devel/sage/sage/categories/primer.py"
sage -t "devel/sage/sage/gsl/probability_distribution.pyx"
Total time for all tests: 6194.6 seconds
Are there other tests to run?
Gokhan Sever
v4.3.1.alpha0 as I reported at http://trac.sagemath.org/sage_trac/ticket/7773
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