Sage 5.10 released
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Jeroen Demeyer
Jun 20, 2013, 10:38:48 AM6/20/13
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Sage 5.10 was released on 17 June 2013. It is available in
source and binary form from:
* http://www.sagemath.org/download.html
Sage (http://www.sagemath.org/) is developed by volunteers and combines
over 90 open source packages. For instructions about installing Sage, see
* http://www.sagemath.org/doc/installation
The following page lists the platforms on which Sage should work:
* http://wiki.sagemath.org/SupportedPlatforms
If you have any questions and/or problems, please report them to any of
these Google groups:
* sage-support: http://groups.google.com/group/sage-support
* sage-devel: http://groups.google.com/group/sage-devel
You can also drop by in #sagemath on freenode or post your questions
at http://ask.sagemath.org/
The following 109 people contributed to this release. Of those, 27 made
their first contribution to Sage:
- Adam Towsley [first contribution]
- Alasdair McAndrew [first contribution]
- Alex Csar
- Alex Ghitza
- Allen Knutson [first contribution]
- Andrew Fleckenstein [first contribution]
- Andrew Gainer-Dewar [first contribution]
- Andrew Mathas
- Andrey Novoseltsev
- Anne Schilling
- Avinash Dalal [first contribution]
- Ben Hutz
- Ben Salisbury
- Beni Keller
- Benjamin Jones
- Burcin Erocal
- Charles Bouillaguet
- Chris Berg
- Chris Wuthrich
- Christian Kuper
- Christian Stump
- Daniel Cabracas [first contribution]
- Darij Grinberg
- David Coudert
- David Roe
- Dmitrii Pasechnik
- Dorota Mazur
- Ed Richmond [first contribution]
- Emil R. Vaughan [first contribution]
- Eviatar Bach
- Florent Hivert
- Florian Göpfert [first contribution]
- Francis Clarke
- Franco Saliola
- François Bissey
- Fredrik Johansson
- Frédéric Chapoton
- Geoffrey Ehrman
- Georg Weber
- Gregg Musiker
- Grégory Chatel [first contribution]
- Guillaume Connan [first contribution]
- Gustavo de Oliveira [first contribution]
- Ivan Andrus
- Jason Grout
- Jean-Baptiste Priez [first contribution]
- Jean-Pierre Flori
- Jeff Ferreira [first contribution]
- Jernej Azarija
- Jeroen Demeyer
- Jesus Torrado [first contribution]
- John Cremona
- John Palmieri
- Jose Guzman
- Julian Rueth
- Julien Puydt
- Kannappan Sampath
- Karl-Dieter Crisman
- Kevin Dilks [first contribution]
- Leif Leonhardy
- Liz Beazley [first contribution]
- Luis Felipe Tabera Alonso
- Marc Mezzarobba
- Marco Streng
- Mark Shimozono
- Marshall Hampton
- Martin Albrecht
- Michael Schneider
- Michael Welsh
- Miguel Marco
- Mike Hansen
- Mike Zabrocki
- Minh Van Nguyen
- Nathann Cohen
- Nico Van Cleemput [first contribution]
- Nicolas Borie
- Nicolas M. Thiéry
- Nils Bruin
- Oscar Castillo-Felisola [first contribution]
- Paul Zimmermann
- Paul-Olivier Dehaye
- Peter Bruin
- Punarbasu Purkayastha
- R. Andrew Ohana
- Robert Bradshaw
- Robert Fitzpatrick [first contribution]
- Robert Gerbicz
- Robert Goss
- Robert Harron
- Samuele Giraudo
- Sangwook Kim [first contribution]
- Scott Mancuso [first contribution]
- Simon King
- Stefan van Zwam [first contribution]
- Stepan Starosta
- Steven Trogdon
- Sébastien Labbé
- Thierry Monteil
- Thomas Feulner
- Tim Dumol
- Tomer Bauer [first contribution]
- Travis Scrimshaw
- Veronica Suaste [first contribution]
- Vincent Delecroix
- Viviane Pons
- Volker Braun
- Vít Tuček [first contribution]
- William Stein
- Xavier Caruso
* Release manager: Jeroen Demeyer.
* We closed 246 tickets in this release. For details, see
http://boxen.math.washington.edu/home/release/sage-5.10/tickets.html
Closed tickets:
#7812: Compute Bell numbers using mpmath by default (instead of GAP)
[Reviewed by Ben Salisbury]
#13783: Set Partitions, either a bug or something is unclear. [Reviewed
by Ben Salisbury]
#14467: Volker Braun: Database of 4-d reflexive polytopes [Reviewed by
Andrey Novoseltsev]
#14475: Nathann Cohen: Update Nauty/Traces to 2.5.rc2 [Reviewed by
Dmitrii Pasechnik]
#14530: Marshall Hampton: Upgrade optional biopython to version 1.61
[Reviewed by Volker Braun]
#8293: Include g77 [Reviewed by Jeroen Demeyer]
#11639: conductor of simple curve over Q(cube root 3) takes forever
[Reviewed by Jeroen Demeyer]
#13281: gurobi backend has no copy(), and creates named constraints
since v5 [Reviewed by Volker Braun]
#961: sage -standard fails without write permission to $SAGE_LOCAL/tmp
[Reviewed by Jeroen Demeyer]
#3723: alarm() doesn't work with the factor() command [Reviewed by
Jeroen Demeyer]
#5085: fix_fpu for real_roots [Reviewed by Jeroen Demeyer]
#5328: Make the ATLAS rebuild on tolerance incremental (followup to
#1641) [Reviewed by Jeroen Demeyer]
#6535: add environ variables to "sage -pkg" script so don't get OS X
metatfiles [Reviewed by Jeroen Demeyer]
#6897: Migrate Notebook to a WSGI Framework (Django, Pylons,
Werkzeug,...) [Reviewed by Jason Grout]
#6957: $SAGE_DATA/extcode/javascript/jsmath appears to be the same as
$SAGE_LOCAL/notebook/javascript/jsmath [Reviewed by Jeroen Demeyer]
#7518: flint -- hangs computing certain degenerate case xgcd's [Reviewed
by Jeroen Demeyer]
#7698: Delete crap in the HMM spkg [Reviewed by Jeroen Demeyer]
#8556: simple server API broken [Reviewed by Jeroen Demeyer]
#8663: pexpect-2.0 no longer available for download [Reviewed by Jeroen
Demeyer]
#8741: Upgrade Twisted to 11.0 [Reviewed by Jason Grout, Tim Dumol]
#11619: linux kernel 3.0 causes headaches with some python modules
[Reviewed by Jeroen Demeyer]
#11743: Improve `make micro_release` [Reviewed by Jeroen Demeyer]
#11843: Bug in trivial abelian group [Reviewed by Chris Wuthrich]
#14360: Robert Bradshaw: Upgrade patchbot [Reviewed by David Roe, Volker
Braun]
#14492: Simon King: Modular group cohomology, version 2.1.4 [Reviewed by
Volker Braun, Jeroen Demeyer]
#14597: Jean-Pierre Flori: Upgrade GCC optional spkgs [Reviewed by
Jeroen Demeyer]
#3123: blacklist "gcc version 4.1.0 (SUSE Linux)" [Reviewed by Jeroen
Demeyer]
#4484: make a platform_quirks.h [Reviewed by Jeroen Demeyer]
#4585: "sage -upgrade" shall call the "sage-location" script [Reviewed
by Jeroen Demeyer]
#4651: re-enable caching of cython dependencies during build [Reviewed
by Jeroen Demeyer]
#4664: Move Cython dependency checking code into upstream Cython
[Reviewed by Jeroen Demeyer]
#6378: [with second patch, needs review] make sage -merge more
user-friendly [Reviewed by Jeroen Demeyer]
#6550: We need to be able to save itermediate files - particulary for
ATLAS [Reviewed by Jeroen Demeyer]
#6743: cygwin metaticket: port Sage to Microsoft Windows (via Cygwin):
stage 1 -- make building Sage automatic [Reviewed by Jean-Pierre Flori,
Dmitrii Pasechnik, Karl-Dieter Crisman, Mike Hansen, William Stein, Luis
Felipe Tabera Alonso]
#7174: ghmm redirects compiler warnings to /dev/null [Reviewed by Jeroen
Demeyer]
#7645: 'set -e' used inappropriately in python-2.6.2.p4 [Reviewed by
Jeroen Demeyer]
#8129: Install jsMath image fonts in a fixed location [Reviewed by
Kannappan Sampath]
#8385: Add hostname, date and time to test.log [Reviewed by Jeroen Demeyer]
#8809: change local/bin/sage_fortran script to respect the SAGE_FORTRAN
variable, if it is set [Reviewed by Jeroen Demeyer]
#9103: ATLAS has modifications to upstream source [Reviewed by Jeroen
Demeyer]
#9196: Update ATLAS to the latest upstream souce [Reviewed by Jeroen
Demeyer]
#9319: extend and improve "sage -merge" [Reviewed by Jeroen Demeyer]
#9385: Building ATLAS goes into an infinite loop [Reviewed by Jeroen
Demeyer]
#9488: [easy] parse make -j N as well as make -jN for parallel builds
[Reviewed by Jeroen Demeyer]
#10051: Building ATLAS fails at STAGE 2-1-2: CacheEdge DETECTION
[Reviewed by Jeroen Demeyer]
#10584: Geoffrey Ehrman: fetch_packages() is defined but never used
[Reviewed by Jeroen Demeyer]
#11989: 'make doc-html' failed due to failed gap command [Reviewed by
Jeroen Demeyer]
#13437: Clean up SIGALRM handling in p_iter_fork [Reviewed by Jeroen
Demeyer]
#13706: atlas spkg does not take the SAGE_ATLAS_ARCH variable into
account when SAGE_FAT_BINARY is set to 'yes' [Reviewed by Volker Braun]
#14598: Upgrade patchbot [Reviewed by Jeroen Demeyer]
#14622: Robert Bradshaw: Another patchbot version bump [Reviewed by
Volker Braun]
#7146: MAKE and sqlite on Solaris: bomb! [Reviewed by Jeroen Demeyer]
#14594: Leif Leonhardy: Make dot2tex work with matplotlib 1.2.x (as well
as older versions) [Reviewed by Travis Scrimshaw]
#945: preparser should ignore " ....:" when it ignores "sage:"
[Reviewed by Thierry Monteil]
#12432: zlib fails to compile shared libs with clang [Reviewed by Jeroen
Demeyer]
#14518: Volker Braun: update zeromq 3.2.0 [Reviewed by Christian Stump,
Jose Guzman]
#14672: Jeroen Demeyer: Experimental GCC 4.8.1 package [Reviewed by
Jean-Pierre Flori]
#11473: Symbolics tracker bug for Sage Days 31 [Reviewed by Burcin Erocal]
#13182: Ivan Andrus: Update sage-mode to 0.9.1 [Reviewed by Frédéric
Chapoton]
#13803: Python binding to limits.h [Reviewed by Leif Leonhardy, Vincent
Delecroix]
#14653: digraphs.Tournament(1) has 0 vertices [Reviewed by Frédéric
Chapoton]
Merged in sage-5.10.beta0:
#6223: Jeroen Demeyer: Remove ext/python_*.pxi [Reviewed by Volker Braun]
#8703: Florent Hivert, Frédéric Chapoton: Combinatorial Rooted Ordered
and Binary Trees [Reviewed by Florent Hivert, Frédéric Chapoton, Viviane
Pons]
#11334: François Bissey: Update numpy to 1.7.0 [Reviewed by Steven
Trogdon, Jeroen Demeyer]
#11745: Guillaume Connan: Some more doctests from the book "Calcul
mathématique avec Sage" [Reviewed by Paul Zimmermann]
#12230: Stepan Starosta: WordMorphism - growing letters [Reviewed by
Vincent Delecroix]
#13131: John Palmieri: Make a top-level table/Table function [Reviewed
by Jason Grout, Karl-Dieter Crisman, Sébastien Labbé]
#13184: Xavier Caruso, Frédéric Chapoton: Some Homset are not unique
parents [Reviewed by Travis Scrimshaw]
#13606: Oscar Castillo-Felisola, Travis Scrimshaw: Adding anticommutator
feature [Reviewed by Kannappan Sampath]
#13693: Jason Grout, John Palmieri,Jean-Pierre Flori: Upgrade matplotlib
to 1.2.1 [Reviewed by John Palmieri, François Bissey]
#13698: Christian Kuper: Access to graph routines of the GLPK [Reviewed
by Nathann Cohen]
#13713: Sébastien Labbé: view: change engine default value from 'latex'
to 'pdflatex' [Reviewed by John Palmieri, Travis Scrimshaw]
#14086: Dorota Mazur: implements parking functions [Reviewed by Mike
Zabrocki]
#14151: Jeroen Demeyer: Update GMP-ECM to 6.4.4 [Reviewed by François
Bissey, Paul Zimmermann]
#14159: Simon King: Don't install callbacks on values of TripleDict,
MonoDict [Reviewed by Nils Bruin]
#14192: Ben Salisbury, Travis Scrimshaw: Infinity crystal of tableaux
[Reviewed by Anne Schilling]
#14252: Anne Schilling: Implementation of quantum LS paths [Reviewed by
Mark Shimozono, Travis Scrimshaw]
#14258: Travis Scrimshaw: Conjugate of a standard tableau is not
returning a standard tableau [Reviewed by Chris Berg]
#14287: Julian Rueth, Travis Scrimshaw: Split _test_elements_eq
[Reviewed by David Roe]
#14291: Nathann Cohen, Volker Braun: Orbits of tuples and sets [Reviewed
by Volker Braun]
#14299: Travis Scrimshaw: Implement Gelfand-Tsetlin patterns [Reviewed
by Chris Berg, Ben Salisbury]
#14337: Frédéric Chapoton: implement shuffle algebras [Reviewed by
Travis Scrimshaw]
#14355: Nathann Cohen: Removes sage.combinat.generator [Reviewed by
Travis Scrimshaw]
#14394: Volker Braun: FaceFan bug if origin is on boundary [Reviewed by
Andrey Novoseltsev]
#14397: R. Andrew Ohana: prepare sage library for cythonizing out of
place [Reviewed by Jeroen Demeyer]
#14421: Anne Schilling: Addition to Thematic Tutorial on crystals
[Reviewed by Travis Scrimshaw]
#14424: Robert Harron: Create is_isomorphic_relative for relative number
fields [Reviewed by Francis Clarke]
#14427: Jeff Ferreira: add key tableau functions to sage.combinat
[Reviewed by Travis Scrimshaw]
#14433: Jeroen Demeyer: Increase number of matches to "tree" in
sagedoc.py doctest [Reviewed by Travis Scrimshaw]
#14439: David Coudert: Fix small bug in blocks_and_cut_vertices
[Reviewed by Nathann Cohen]
#14448: Thierry Monteil: Bad sign in sign_mantissa_exponent() methods
[Reviewed by Travis Scrimshaw]
#14453: Jeroen Demeyer: libGAP error handling bug [Reviewed by Volker Braun]
#14459: Frédéric Chapoton: add missing link for doc of q_bernoulli
[Reviewed by Travis Scrimshaw]
#14461: Grégory Chatel: Change the method cardinality to
StandardTableaux of fixed size [Reviewed by Travis Scrimshaw, Mike Hansen]
#14462: Mike Hansen: Faster implementation for number of standard skew
tableaux [Reviewed by Travis Scrimshaw]
Merged in sage-5.10.beta1:
#9005: Alasdair McAndrew, Travis Scrimshaw: Derangements [Reviewed by
Ben Salisbury]
#10037: Volker Braun: cddlib/Polyhedron bug [Reviewed by Andrey Novoseltsev]
#10170: Robert Gerbicz, Travis Scrimshaw: Speed up the computation of
Bell numbers [Reviewed by Ben Salisbury]
#11140: Robert Goss, Frédéric Chapoton: Mapping torus [Reviewed by John
Palmieri]
#12498: Punarbasu Purkayastha: Return Integer from
GeneralDiscreteDistribution [Reviewed by Frédéric Chapoton]
#12569: Samuele Giraudo, Frédéric Chapoton: Implementation of
permutohedron intervals [Reviewed by Frédéric Chapoton, Nathann Cohen]
#12781: Volker Braun: code inspection appends doc dirs to sys.path
[Reviewed by Burcin Erocal]
#12894: Nicolas M. Thiéry: Add classcall setter in ClasscallMetaclass
[Reviewed by Florent Hivert]
#13961: Nathann Cohen: Compute the root graph of a graph (inverse of
Graph.line_graph) [Reviewed by David Coudert]
#14187: Volker Braun: Check that lazy imports are not resolved during
startup [Reviewed by Nicolas M. Thiéry, Travis Scrimshaw]
#14203: John Palmieri: Move DOCTEST_MODE to doctesting framework
[Reviewed by Volker Braun]
#14300: Robert Harron: CyclotomicField's is_isomorphic is mathematically
incorrect [Reviewed by Francis Clarke]
#14335: Martin Albrecht: update M4RI to version 20130416 [Reviewed by
Volker Braun]
#14336: Martin Albrecht: update M4RIE to version 20130416 [Reviewed by
Volker Braun]
#14348: Andrew Gainer-Dewar: Implement cycle index of combinatorial
logarithm (virtual) species [Reviewed by Frédéric Chapoton]
#14395: Nathann Cohen: Bug in MixedIntegerLinearProgram.polyhedron
[Reviewed by Dmitrii Pasechnik]
#14418: Frédéric Chapoton: the exterior algebras [Reviewed by Travis
Scrimshaw]
#14423: Volker Braun: python-2.7.4 [Reviewed by Jeroen Demeyer]
#14435: Nathann Cohen: A certificate for is_forest [Reviewed by Frédéric
Chapoton]
#14441: Jeroen Demeyer: Upgrade GCC to 4.7.3 [Reviewed by Jean-Pierre Flori]
#14463: Frédéric Chapoton: cleanup of the file gsl/dft.py [Reviewed by
Travis Scrimshaw]
#14464: Frédéric Chapoton: cleanup of yang baxter graph [Reviewed by
Travis Scrimshaw]
#14466: Volker Braun, Nils Bruin: issue with type in doctests [Reviewed
by Nils Bruin, Volker Braun]
#14472: John Cremona, Jeroen Demeyer: some elliptic curve functions over
number fields fail over relative fields [Reviewed by Jeroen Demeyer,
John Cremona]
#14474: Nathann Cohen: Hypergraph enumeration through Nauty [Reviewed by
Dmitrii Pasechnik]
#14477: R. Andrew Ohana: Graph database query results should be sorted
[Reviewed by Volker Braun, Jeroen Demeyer]
#14479: Volker Braun: Catch CDD errors during polyhedron construction
[Reviewed by Dmitrii Pasechnik]
#14483: Nathann Cohen: Helpful message if GAP fails to load a package
[Reviewed by Dmitrii Pasechnik]
#14486: Volker Braun: 0 == Set([0]) raises error [Reviewed by Nathann Cohen]
#14488: Jeroen Demeyer: Remove notebook stuff from extcode [Reviewed by
Volker Braun]
Merged in sage-5.10.beta2:
#12553: Volker Braun: Add interface for PALP polytope databases
[Reviewed by Dmitrii Pasechnik]
#14055: Jeroen Demeyer, Volker Braun: Fix sage-cleaner [Reviewed by John
Palmieri, Leif Leonhardy, Volker Braun]
#14145: Travis Scrimshaw, Andrew Mathas: Problems with contains for
Tableau, TableauTuples and PartitionTuples [Reviewed by Andrew Mathas,
Travis Scrimshaw]
#14146: Charles Bouillaguet: Warn when creating number fields with
non-monic-integral polynomials [Reviewed by Marco Streng]
#14248: Travis Scrimshaw: Add case sensitive to global options [Reviewed
by Andrew Mathas]
#14283: Nathann Cohen, Dmitrii Pasechnik: M22 and Cameron graph
constructors [Reviewed by Dmitrii Pasechnik]
#14297: Frédéric Chapoton: is_strongly_regular does not handle complete
graphs [Reviewed by Jernej Azarija, Frédéric Chapoton, Nathann Cohen]
#14301: Travis Scrimshaw: Improvement to alternating sign matrices
[Reviewed by Chris Berg]
#14319: Nathann Cohen: Automorphism group with labeled vertices
[Reviewed by Volker Braun]
#14412: Nathann Cohen: Bug in DiGraph.longest_path [Reviewed by Nicolas
M. Thiéry]
#14419: Frédéric Chapoton: cleanup of
sage/quadratic_forms/special_values.py [Reviewed by Travis Scrimshaw]
#14454: Travis Scrimshaw, Anne Schilling: Regular crystals category
[Reviewed by Anne Schilling, Travis Scrimshaw]
#14494: Jean-Baptiste Priez: HG ignore for eclipse project [Reviewed by
Volker Braun]
#14496: Frédéric Chapoton: unify the three implementations of gaussian
q-binomial coefficients [Reviewed by Francis Clarke, Travis Scrimshaw]
#14497: Christian Stump: Universal cyclotomic field fails to convert 0
to QQ [Reviewed by Volker Braun]
#14499: Nathann Cohen: Some cleaup in sage/combinat/design [Reviewed by
Stefan van Zwam]
#14501: David Coudert: Fix memory allocation problems in
data_structures_pyx.pxi [Reviewed by Nathann Cohen]
#14502: David Coudert: Improvements of hyperbolicity procedures
[Reviewed by Nathann Cohen]
#14503: Tomer Bauer: Typos in the reference manual: GAP interface and
Weyl group [Reviewed by Nathann Cohen]
#14514: Nathann Cohen: A constructor for the Brouwer-Haemers graph
[Reviewed by Jernej Azarija]
#14527: Jernej Azarija: chromatic_polynomial - fixed memory leak and
added new test cases [Reviewed by Nathann Cohen]
#14531: Nathann Cohen: Gurobi is not built anymore because of a typo !
[Reviewed by Leif Leonhardy]
#14534: Thomas Feulner: Composition of ring homomorphisms [Reviewed by
Francis Clarke]
#14538: Jeroen Demeyer: Add support for "huge" packages [Reviewed by
Volker Braun]
#14544: Robert Bradshaw: Cython dependency checking broken [Reviewed by
Jeroen Demeyer]
Merged in sage-5.10.beta3:
#2023: Travis Scrimshaw: Latex pictures for Dynkin diagram and misc
improvements to Cartan types [Reviewed by Nicolas M. Thiéry]
#11908: Frédéric Chapoton: Fix tree plotting again [Reviewed by Nathann
Cohen]
#12173: Mike Hansen, Fredrik Johansson, Jean-Pierre Flori: Update FLINT
to 2.3 [Reviewed by John Cremona, Jeroen Demeyer, Burcin Erocal]
#12509: John Cremona: computation of height of point on elliptic curve
over Q(sqrt(5)) is WRONG [Reviewed by Peter Bruin, Chris Wuthrich]
#12973: Emil R. Vaughan, Nathann Cohen: Cannot copy() instances of
GurobiBackend. [Reviewed by Volker Braun]
#13004: Volker Braun: make micro_release doesn't work [Reviewed by Marc
Mezzarobba]
#13225: Alex Csar, Kevin Dilks, Sangwook Kim: Check if lattices are
upper/lower-semimodular and modular [Reviewed by Frédéric Chapoton]
#14217: Ben Hutz: basic iteration functionality for affine and
projective morphisms [Reviewed by Adam Towsley]
#14375: Volker Braun: Indicate escape codes in doctest output [Reviewed
by Jeroen Demeyer, Volker Braun]
#14417: Jeroen Demeyer: Various cleanup of scripts [Reviewed by R.
Andrew Ohana]
#14478: Martin Albrecht, Robert Fitzpatrick, Daniel Cabracas, Florian
Göpfert, Michael Schneider: (Ring-) Learning with Errors Oracles
[Reviewed by Minh Van Nguyen]
#14487: Jeroen Demeyer: lrcalc spkg contains broken symlinks [Reviewed
by Nicolas M. Thiéry]
#14521: Jeroen Demeyer: Fix Sage.app on OS X 10.4 [Reviewed by Michael
Welsh, Karl-Dieter Crisman]
#14528: Jernej Azarija: Additional doctests for the graph module
[Reviewed by Nathann Cohen]
#14533: Tomer Bauer: Add strands with different colors in BraidGroup
plot [Reviewed by Frédéric Chapoton]
#14539: Jeroen Demeyer: Upgrade PARI to 2.5.4 [Reviewed by Jean-Pierre
Flori]
#14554: Scott Mancuso: Fix typo in combinat.py [Reviewed by Nicolas M.
Thiéry]
#14557: Jeroen Demeyer: doctesting framework doesn't properly handle
atexit [Reviewed by R. Andrew Ohana]
#14560: Travis Scrimshaw: Implement hash for Gelfand-Tsetlin patterns
[Reviewed by Chris Berg]
#14562: Nathann Cohen: Steiner Quadruple Systems [Reviewed by Volker Braun]
#14566: Nathann Cohen: Optional parameters for Gurobi [Reviewed by
Volker Braun]
#14569: R. Andrew Ohana: Upgrade to Cython 0.19.1 [Reviewed by Jeroen
Demeyer]
Merged in sage-5.10.beta4:
#4327: Nicolas Borie, Nicolas M. Thiéry: Refactor and extend root
systems plots [Reviewed by Nicolas M. Thiéry, Nicolas Borie, Travis
Scrimshaw]
#12532: Veronica Suaste: plot3d transformations should take symbolic
vectors [Reviewed by Miguel Marco]
#12832: Jeroen Demeyer: Upgrade cvxopt to 1.1.6 [Reviewed by Volker Braun]
#13213: Vincent Delecroix: Comparisons in quadratic number field
[Reviewed by Burcin Erocal, Volker Braun]
#13724: Nicolas M. Thiéry, Jesus Torrado: Improved support for
relabelled Cartan types [Reviewed by Travis Scrimshaw]
#13836: Andrew Fleckenstein: Fix variable dependence in
PiecewisePolynomial [Reviewed by Burcin Erocal]
#13953: Peter Bruin: (non)archimedian_local_height of a torsion points
always gives 0 [Reviewed by Chris Wuthrich]
#14141: Franco Saliola, Avinash Dalal, Anne Schilling: Implementation of
Knutson-Tao puzzles [Reviewed by Allen Knutson, Liz Beazley, Ed Richmond]
#14473: Nathann Cohen: Old deprecation warnings [Reviewed by Travis
Scrimshaw]
#14532: Nathann Cohen: Symplectic graphs [Reviewed by Frédéric Chapoton]
#14570: R. Andrew Ohana: Cythonize Sage library out of tree [Reviewed by
Jeroen Demeyer]
#14576: Nicolas M. Thiéry: Fix side effect in the affine method of
relabelled cartan types [Reviewed by Anne Schilling]
#14578: John Palmieri: SimplicialComplex chain complex composition not
zero [Reviewed by Volker Braun]
#14583: Darij Grinberg: Permutation('()') and Permutation(''), each in
its own way, fail to return the identity in S_0 [Reviewed by Nathann Cohen]
#14584: Alex Ghitza: trivial doc fixes for symmetric functions [Reviewed
by Mike Hansen]
#14593: Jean-Pierre Flori: Typo in source.rst [Reviewed by Jeroen Demeyer]
#14596: Jeroen Demeyer: Make a new optional spkg for pari's databases
[Reviewed by John Cremona]
#14603: Volker Braun: Remove the FLINT include directory from
module_list.py [Reviewed by Nathann Cohen, Leif Leonhardy, Jeroen Demeyer]
#14606: Jeroen Demeyer: Race condition with GAP workspaces [Reviewed by
Volker Braun]
Merged in sage-5.10.beta5:
#5825: Jeroen Demeyer: sage -i $FOO.spkg should abort cleanly when write
permissions are lacking [Reviewed by John Palmieri]
#9890: Nathann Cohen: A proper random_element() method for
PerfectMatchings [Reviewed by Frédéric Chapoton]
#10508: Volker Braun, Jeroen Demeyer, Jean-Pierre Flori: Update ATLAS to
stable version 3.10.1 [Reviewed by Benjamin Jones, Karl-Dieter Crisman,
Dmitrii Pasechnik, Georg Weber, François Bissey, John Palmieri, Volker
Braun]
#11463: Florent Hivert: Add a Sage vs. Python FAQ [Reviewed by Gustavo
de Oliveira, Travis Scrimshaw]
#11539: Eviatar Bach, Nils Bruin: Sage incorrectly interprets factorials
in equations. [Reviewed by Karl-Dieter Crisman]
#12728: Julien Puydt: sage's spkg sources should use correct include
paths instead of having ../../../../whatever everywhere [Reviewed by
Volker Braun, Jeroen Demeyer, Julien Puydt]
#13735: Vít Tuček: Fixing a bug in sage.misc.misc.coeff_repr [Reviewed
by Andrey Novoseltsev]
#13947: Leif Leonhardy: zn_poly segfaults during tuning and tests on OS
X and Cygwin when built on a busy system [Reviewed by Jeroen Demeyer]
#14056: Jernej Azarija: Distance matrix [Reviewed by Nathann Cohen]
#14131: Darij Grinberg: Greene-Kleitman partition of a poset [Reviewed
by Travis Scrimshaw]
#14235: Mike Zabrocki: Implements antipode and counit in new_kschur.py
[Reviewed by Travis Scrimshaw]
#14237: Mike Zabrocki: Implements coproduct, antipode and counit in
k_dual.py [Reviewed by Travis Scrimshaw]
#14281: Punarbasu Purkayastha: sage -advanced doesn't document the
-sagenb option [Reviewed by Julien Puydt]
#14545: Thomas Feulner: Initialization of a graph breaks latex output of
any other object [Reviewed by Nathann Cohen]
#14556: Julien Puydt, Jeroen Demeyer: The maxima spkg has cruft dating
back to days of clisp use [Reviewed by Jeroen Demeyer, Julien Puydt]
#14559: Thierry Monteil: Make sage-banner more pretty [Reviewed by John
Palmieri, Volker Braun]
#14574: Darij Grinberg: Bender-Knuth involutions and standardization of
semistandard Young tableaux [Reviewed by Travis Scrimshaw]
#14601: John Palmieri: table.__repr__() replaces True and False by 1 and
0 [Reviewed by Sébastien Labbé]
#14611: Frédéric Chapoton: cleanup of tiling.py [Reviewed by Nathann Cohen]
#14612: Travis Scrimshaw: Speedup long test in generalized Young walls
[Reviewed by Anne Schilling]
#14616: Nico Van Cleemput: Several typing mistakes in documentation of
independent_set_of_representatives function [Reviewed by Nathann Cohen]
#14617: Jean-Pierre Flori: Update scipy to 0.12 [Reviewed by Volker Braun]
#14621: Tomer Bauer: Bitwise xor documentation in the tutorial and FAQ
[Reviewed by Karl-Dieter Crisman]
#14623: Volker Braun: occasional doctest failure in test_graceful_exit
[Reviewed by Jeroen Demeyer]
#14626: Jeroen Demeyer: Docbuilder hangs if latex fails [Reviewed by
John Palmieri]
#14629: Jeroen Demeyer: Upgrade and clean up sqlite package [Reviewed by
François Bissey]
Merged in sage-5.10.rc0:
#12447: Jeroen Demeyer, John Palmieri: update the file COPYING.txt
[Reviewed by John Palmieri]
#13690: Punarbasu Purkayastha: legend marker 'o' is incorrectly printed
[Reviewed by Nathann Cohen]
#14123: Viviane Pons: Adding new combinatorial maps to binary trees
[Reviewed by Christian Stump]
#14161: Franco Saliola: add a _test_antipode method for Hopf algebras
[Reviewed by Mike Zabrocki]
#14249: Simon King: There should be no need to have _an_element_ to
multiply elements [Reviewed by Travis Scrimshaw]
#14442: Nathann Cohen: Graph.is_circular_planar does not behave as
expected [Reviewed by Nico Van Cleemput]
#14536: Nathann Cohen: Random tournaments, a misnamed method and a
segfault [Reviewed by Frédéric Chapoton]
#14550: Beni Keller: German tutorial for school teachers (mainly aimed
at Gymnasium level) [Reviewed by Paul-Olivier Dehaye]
#14568: Vincent Delecroix: prepend list to lazy_list [Reviewed by Travis
Scrimshaw]
#14575: Jeroen Demeyer: Improve ./sage -t --new [Reviewed by David Roe]
#14577: Chris Wuthrich: Bug in the case S_4 in Galois representations of
elliptic curves [Reviewed by Frédéric Chapoton]
#14587: Martin Albrecht: Gröbner bases via Macaulay2 broken [Reviewed by
Volker Braun]
#14632: Punarbasu Purkayastha: make generic_graph.plot() pass its
options to show [Reviewed by Nathann Cohen]
#14650: Jeroen Demeyer: Clarify in docs that Sage is GPL version 3
[Reviewed by Volker Braun]
Merged in sage-5.10.rc1:
#14302: Chris Berg: Adding combinatorial maps decorators to various
combinatorial classes [Reviewed by Christian Stump]
#14525: Nico Van Cleemput: cliquer does not like the empty graph
[Reviewed by Nathann Cohen]
#14561: Frédéric Chapoton: cleanup of doc in sha_tate.py [Reviewed by
Volker Braun]
#14571: Volker Braun: Improve UTF-8 support in LaTeX documentation
[Reviewed by Dmitrii Pasechnik]
#14638: Gregg Musiker: Fixes a bug in mutation_class (cluster seed)
[Reviewed by Christian Stump]
#14649: Volker Braun: Cython debug symbols and sage --gdb [Reviewed by
Jeroen Demeyer]
#14661: Jeroen Demeyer: Upgrade zlib to 1.2.8 [Reviewed by Volker Braun]
#14662: Jeroen Demeyer: Fix ECL relocation [Reviewed by Volker Braun]
#14673: Frédéric Chapoton: turn crystalographic into crystallographic
[Reviewed by Travis Scrimshaw, Nicolas M. Thiéry]
#14691: Karl-Dieter Crisman: Reference links fix in
schemes/toric/ideal.py [Reviewed by Volker Braun]
Merged in sage-5.10.rc2:
#13245: John Palmieri, Leif Leonhardy: sage --clone: do not rebuild the
entire Sage library, and do not rebuild the docs [Reviewed by John
Palmieri, Travis Scrimshaw, Leif Leonhardy]
#14699: Jean-Pierre Flori, Volker Braun, Jeroen Demeyer: Install ATLAS
header files and cleanup IML spkg [Reviewed by Jean-Pierre Flori]
#14705: Jeroen Demeyer: Misc changes to install guide [Reviewed by
Jean-Pierre Flori]
#14721: Leif Leonhardy: Disable "cythonizing out-of-tree" until
sage-sync-build and sage-clone can deal with that [Reviewed by Travis
Scrimshaw]
Merged in sage-5.10:
#14753: Jeroen Demeyer: Revert ATLAS package [Reviewed by Jeroen Demeyer]
source and binary form from:
* http://www.sagemath.org/download.html
Sage (http://www.sagemath.org/) is developed by volunteers and combines
over 90 open source packages. For instructions about installing Sage, see
* http://www.sagemath.org/doc/installation
The following page lists the platforms on which Sage should work:
* http://wiki.sagemath.org/SupportedPlatforms
If you have any questions and/or problems, please report them to any of
these Google groups:
* sage-support: http://groups.google.com/group/sage-support
* sage-devel: http://groups.google.com/group/sage-devel
You can also drop by in #sagemath on freenode or post your questions
at http://ask.sagemath.org/
The following 109 people contributed to this release. Of those, 27 made
their first contribution to Sage:
- Adam Towsley [first contribution]
- Alasdair McAndrew [first contribution]
- Alex Csar
- Alex Ghitza
- Allen Knutson [first contribution]
- Andrew Fleckenstein [first contribution]
- Andrew Gainer-Dewar [first contribution]
- Andrew Mathas
- Andrey Novoseltsev
- Anne Schilling
- Avinash Dalal [first contribution]
- Ben Hutz
- Ben Salisbury
- Beni Keller
- Benjamin Jones
- Burcin Erocal
- Charles Bouillaguet
- Chris Berg
- Chris Wuthrich
- Christian Kuper
- Christian Stump
- Daniel Cabracas [first contribution]
- Darij Grinberg
- David Coudert
- David Roe
- Dmitrii Pasechnik
- Dorota Mazur
- Ed Richmond [first contribution]
- Emil R. Vaughan [first contribution]
- Eviatar Bach
- Florent Hivert
- Florian Göpfert [first contribution]
- Francis Clarke
- Franco Saliola
- François Bissey
- Fredrik Johansson
- Frédéric Chapoton
- Geoffrey Ehrman
- Georg Weber
- Gregg Musiker
- Grégory Chatel [first contribution]
- Guillaume Connan [first contribution]
- Gustavo de Oliveira [first contribution]
- Ivan Andrus
- Jason Grout
- Jean-Baptiste Priez [first contribution]
- Jean-Pierre Flori
- Jeff Ferreira [first contribution]
- Jernej Azarija
- Jeroen Demeyer
- Jesus Torrado [first contribution]
- John Cremona
- John Palmieri
- Jose Guzman
- Julian Rueth
- Julien Puydt
- Kannappan Sampath
- Karl-Dieter Crisman
- Kevin Dilks [first contribution]
- Leif Leonhardy
- Liz Beazley [first contribution]
- Luis Felipe Tabera Alonso
- Marc Mezzarobba
- Marco Streng
- Mark Shimozono
- Marshall Hampton
- Martin Albrecht
- Michael Schneider
- Michael Welsh
- Miguel Marco
- Mike Hansen
- Mike Zabrocki
- Minh Van Nguyen
- Nathann Cohen
- Nico Van Cleemput [first contribution]
- Nicolas Borie
- Nicolas M. Thiéry
- Nils Bruin
- Oscar Castillo-Felisola [first contribution]
- Paul Zimmermann
- Paul-Olivier Dehaye
- Peter Bruin
- Punarbasu Purkayastha
- R. Andrew Ohana
- Robert Bradshaw
- Robert Fitzpatrick [first contribution]
- Robert Gerbicz
- Robert Goss
- Robert Harron
- Samuele Giraudo
- Sangwook Kim [first contribution]
- Scott Mancuso [first contribution]
- Simon King
- Stefan van Zwam [first contribution]
- Stepan Starosta
- Steven Trogdon
- Sébastien Labbé
- Thierry Monteil
- Thomas Feulner
- Tim Dumol
- Tomer Bauer [first contribution]
- Travis Scrimshaw
- Veronica Suaste [first contribution]
- Vincent Delecroix
- Viviane Pons
- Volker Braun
- Vít Tuček [first contribution]
- William Stein
- Xavier Caruso
* Release manager: Jeroen Demeyer.
* We closed 246 tickets in this release. For details, see
http://boxen.math.washington.edu/home/release/sage-5.10/tickets.html
Closed tickets:
#7812: Compute Bell numbers using mpmath by default (instead of GAP)
[Reviewed by Ben Salisbury]
#13783: Set Partitions, either a bug or something is unclear. [Reviewed
by Ben Salisbury]
#14467: Volker Braun: Database of 4-d reflexive polytopes [Reviewed by
Andrey Novoseltsev]
#14475: Nathann Cohen: Update Nauty/Traces to 2.5.rc2 [Reviewed by
Dmitrii Pasechnik]
#14530: Marshall Hampton: Upgrade optional biopython to version 1.61
[Reviewed by Volker Braun]
#8293: Include g77 [Reviewed by Jeroen Demeyer]
#11639: conductor of simple curve over Q(cube root 3) takes forever
[Reviewed by Jeroen Demeyer]
#13281: gurobi backend has no copy(), and creates named constraints
since v5 [Reviewed by Volker Braun]
#961: sage -standard fails without write permission to $SAGE_LOCAL/tmp
[Reviewed by Jeroen Demeyer]
#3723: alarm() doesn't work with the factor() command [Reviewed by
Jeroen Demeyer]
#5085: fix_fpu for real_roots [Reviewed by Jeroen Demeyer]
#5328: Make the ATLAS rebuild on tolerance incremental (followup to
#1641) [Reviewed by Jeroen Demeyer]
#6535: add environ variables to "sage -pkg" script so don't get OS X
metatfiles [Reviewed by Jeroen Demeyer]
#6897: Migrate Notebook to a WSGI Framework (Django, Pylons,
Werkzeug,...) [Reviewed by Jason Grout]
#6957: $SAGE_DATA/extcode/javascript/jsmath appears to be the same as
$SAGE_LOCAL/notebook/javascript/jsmath [Reviewed by Jeroen Demeyer]
#7518: flint -- hangs computing certain degenerate case xgcd's [Reviewed
by Jeroen Demeyer]
#7698: Delete crap in the HMM spkg [Reviewed by Jeroen Demeyer]
#8556: simple server API broken [Reviewed by Jeroen Demeyer]
#8663: pexpect-2.0 no longer available for download [Reviewed by Jeroen
Demeyer]
#8741: Upgrade Twisted to 11.0 [Reviewed by Jason Grout, Tim Dumol]
#11619: linux kernel 3.0 causes headaches with some python modules
[Reviewed by Jeroen Demeyer]
#11743: Improve `make micro_release` [Reviewed by Jeroen Demeyer]
#11843: Bug in trivial abelian group [Reviewed by Chris Wuthrich]
#14360: Robert Bradshaw: Upgrade patchbot [Reviewed by David Roe, Volker
Braun]
#14492: Simon King: Modular group cohomology, version 2.1.4 [Reviewed by
Volker Braun, Jeroen Demeyer]
#14597: Jean-Pierre Flori: Upgrade GCC optional spkgs [Reviewed by
Jeroen Demeyer]
#3123: blacklist "gcc version 4.1.0 (SUSE Linux)" [Reviewed by Jeroen
Demeyer]
#4484: make a platform_quirks.h [Reviewed by Jeroen Demeyer]
#4585: "sage -upgrade" shall call the "sage-location" script [Reviewed
by Jeroen Demeyer]
#4651: re-enable caching of cython dependencies during build [Reviewed
by Jeroen Demeyer]
#4664: Move Cython dependency checking code into upstream Cython
[Reviewed by Jeroen Demeyer]
#6378: [with second patch, needs review] make sage -merge more
user-friendly [Reviewed by Jeroen Demeyer]
#6550: We need to be able to save itermediate files - particulary for
ATLAS [Reviewed by Jeroen Demeyer]
#6743: cygwin metaticket: port Sage to Microsoft Windows (via Cygwin):
stage 1 -- make building Sage automatic [Reviewed by Jean-Pierre Flori,
Dmitrii Pasechnik, Karl-Dieter Crisman, Mike Hansen, William Stein, Luis
Felipe Tabera Alonso]
#7174: ghmm redirects compiler warnings to /dev/null [Reviewed by Jeroen
Demeyer]
#7645: 'set -e' used inappropriately in python-2.6.2.p4 [Reviewed by
Jeroen Demeyer]
#8129: Install jsMath image fonts in a fixed location [Reviewed by
Kannappan Sampath]
#8385: Add hostname, date and time to test.log [Reviewed by Jeroen Demeyer]
#8809: change local/bin/sage_fortran script to respect the SAGE_FORTRAN
variable, if it is set [Reviewed by Jeroen Demeyer]
#9103: ATLAS has modifications to upstream source [Reviewed by Jeroen
Demeyer]
#9196: Update ATLAS to the latest upstream souce [Reviewed by Jeroen
Demeyer]
#9319: extend and improve "sage -merge" [Reviewed by Jeroen Demeyer]
#9385: Building ATLAS goes into an infinite loop [Reviewed by Jeroen
Demeyer]
#9488: [easy] parse make -j N as well as make -jN for parallel builds
[Reviewed by Jeroen Demeyer]
#10051: Building ATLAS fails at STAGE 2-1-2: CacheEdge DETECTION
[Reviewed by Jeroen Demeyer]
#10584: Geoffrey Ehrman: fetch_packages() is defined but never used
[Reviewed by Jeroen Demeyer]
#11989: 'make doc-html' failed due to failed gap command [Reviewed by
Jeroen Demeyer]
#13437: Clean up SIGALRM handling in p_iter_fork [Reviewed by Jeroen
Demeyer]
#13706: atlas spkg does not take the SAGE_ATLAS_ARCH variable into
account when SAGE_FAT_BINARY is set to 'yes' [Reviewed by Volker Braun]
#14598: Upgrade patchbot [Reviewed by Jeroen Demeyer]
#14622: Robert Bradshaw: Another patchbot version bump [Reviewed by
Volker Braun]
#7146: MAKE and sqlite on Solaris: bomb! [Reviewed by Jeroen Demeyer]
#14594: Leif Leonhardy: Make dot2tex work with matplotlib 1.2.x (as well
as older versions) [Reviewed by Travis Scrimshaw]
#945: preparser should ignore " ....:" when it ignores "sage:"
[Reviewed by Thierry Monteil]
#12432: zlib fails to compile shared libs with clang [Reviewed by Jeroen
Demeyer]
#14518: Volker Braun: update zeromq 3.2.0 [Reviewed by Christian Stump,
Jose Guzman]
#14672: Jeroen Demeyer: Experimental GCC 4.8.1 package [Reviewed by
Jean-Pierre Flori]
#11473: Symbolics tracker bug for Sage Days 31 [Reviewed by Burcin Erocal]
#13182: Ivan Andrus: Update sage-mode to 0.9.1 [Reviewed by Frédéric
Chapoton]
#13803: Python binding to limits.h [Reviewed by Leif Leonhardy, Vincent
Delecroix]
#14653: digraphs.Tournament(1) has 0 vertices [Reviewed by Frédéric
Chapoton]
Merged in sage-5.10.beta0:
#6223: Jeroen Demeyer: Remove ext/python_*.pxi [Reviewed by Volker Braun]
#8703: Florent Hivert, Frédéric Chapoton: Combinatorial Rooted Ordered
and Binary Trees [Reviewed by Florent Hivert, Frédéric Chapoton, Viviane
Pons]
#11334: François Bissey: Update numpy to 1.7.0 [Reviewed by Steven
Trogdon, Jeroen Demeyer]
#11745: Guillaume Connan: Some more doctests from the book "Calcul
mathématique avec Sage" [Reviewed by Paul Zimmermann]
#12230: Stepan Starosta: WordMorphism - growing letters [Reviewed by
Vincent Delecroix]
#13131: John Palmieri: Make a top-level table/Table function [Reviewed
by Jason Grout, Karl-Dieter Crisman, Sébastien Labbé]
#13184: Xavier Caruso, Frédéric Chapoton: Some Homset are not unique
parents [Reviewed by Travis Scrimshaw]
#13606: Oscar Castillo-Felisola, Travis Scrimshaw: Adding anticommutator
feature [Reviewed by Kannappan Sampath]
#13693: Jason Grout, John Palmieri,Jean-Pierre Flori: Upgrade matplotlib
to 1.2.1 [Reviewed by John Palmieri, François Bissey]
#13698: Christian Kuper: Access to graph routines of the GLPK [Reviewed
by Nathann Cohen]
#13713: Sébastien Labbé: view: change engine default value from 'latex'
to 'pdflatex' [Reviewed by John Palmieri, Travis Scrimshaw]
#14086: Dorota Mazur: implements parking functions [Reviewed by Mike
Zabrocki]
#14151: Jeroen Demeyer: Update GMP-ECM to 6.4.4 [Reviewed by François
Bissey, Paul Zimmermann]
#14159: Simon King: Don't install callbacks on values of TripleDict,
MonoDict [Reviewed by Nils Bruin]
#14192: Ben Salisbury, Travis Scrimshaw: Infinity crystal of tableaux
[Reviewed by Anne Schilling]
#14252: Anne Schilling: Implementation of quantum LS paths [Reviewed by
Mark Shimozono, Travis Scrimshaw]
#14258: Travis Scrimshaw: Conjugate of a standard tableau is not
returning a standard tableau [Reviewed by Chris Berg]
#14287: Julian Rueth, Travis Scrimshaw: Split _test_elements_eq
[Reviewed by David Roe]
#14291: Nathann Cohen, Volker Braun: Orbits of tuples and sets [Reviewed
by Volker Braun]
#14299: Travis Scrimshaw: Implement Gelfand-Tsetlin patterns [Reviewed
by Chris Berg, Ben Salisbury]
#14337: Frédéric Chapoton: implement shuffle algebras [Reviewed by
Travis Scrimshaw]
#14355: Nathann Cohen: Removes sage.combinat.generator [Reviewed by
Travis Scrimshaw]
#14394: Volker Braun: FaceFan bug if origin is on boundary [Reviewed by
Andrey Novoseltsev]
#14397: R. Andrew Ohana: prepare sage library for cythonizing out of
place [Reviewed by Jeroen Demeyer]
#14421: Anne Schilling: Addition to Thematic Tutorial on crystals
[Reviewed by Travis Scrimshaw]
#14424: Robert Harron: Create is_isomorphic_relative for relative number
fields [Reviewed by Francis Clarke]
#14427: Jeff Ferreira: add key tableau functions to sage.combinat
[Reviewed by Travis Scrimshaw]
#14433: Jeroen Demeyer: Increase number of matches to "tree" in
sagedoc.py doctest [Reviewed by Travis Scrimshaw]
#14439: David Coudert: Fix small bug in blocks_and_cut_vertices
[Reviewed by Nathann Cohen]
#14448: Thierry Monteil: Bad sign in sign_mantissa_exponent() methods
[Reviewed by Travis Scrimshaw]
#14453: Jeroen Demeyer: libGAP error handling bug [Reviewed by Volker Braun]
#14459: Frédéric Chapoton: add missing link for doc of q_bernoulli
[Reviewed by Travis Scrimshaw]
#14461: Grégory Chatel: Change the method cardinality to
StandardTableaux of fixed size [Reviewed by Travis Scrimshaw, Mike Hansen]
#14462: Mike Hansen: Faster implementation for number of standard skew
tableaux [Reviewed by Travis Scrimshaw]
Merged in sage-5.10.beta1:
#9005: Alasdair McAndrew, Travis Scrimshaw: Derangements [Reviewed by
Ben Salisbury]
#10037: Volker Braun: cddlib/Polyhedron bug [Reviewed by Andrey Novoseltsev]
#10170: Robert Gerbicz, Travis Scrimshaw: Speed up the computation of
Bell numbers [Reviewed by Ben Salisbury]
#11140: Robert Goss, Frédéric Chapoton: Mapping torus [Reviewed by John
Palmieri]
#12498: Punarbasu Purkayastha: Return Integer from
GeneralDiscreteDistribution [Reviewed by Frédéric Chapoton]
#12569: Samuele Giraudo, Frédéric Chapoton: Implementation of
permutohedron intervals [Reviewed by Frédéric Chapoton, Nathann Cohen]
#12781: Volker Braun: code inspection appends doc dirs to sys.path
[Reviewed by Burcin Erocal]
#12894: Nicolas M. Thiéry: Add classcall setter in ClasscallMetaclass
[Reviewed by Florent Hivert]
#13961: Nathann Cohen: Compute the root graph of a graph (inverse of
Graph.line_graph) [Reviewed by David Coudert]
#14187: Volker Braun: Check that lazy imports are not resolved during
startup [Reviewed by Nicolas M. Thiéry, Travis Scrimshaw]
#14203: John Palmieri: Move DOCTEST_MODE to doctesting framework
[Reviewed by Volker Braun]
#14300: Robert Harron: CyclotomicField's is_isomorphic is mathematically
incorrect [Reviewed by Francis Clarke]
#14335: Martin Albrecht: update M4RI to version 20130416 [Reviewed by
Volker Braun]
#14336: Martin Albrecht: update M4RIE to version 20130416 [Reviewed by
Volker Braun]
#14348: Andrew Gainer-Dewar: Implement cycle index of combinatorial
logarithm (virtual) species [Reviewed by Frédéric Chapoton]
#14395: Nathann Cohen: Bug in MixedIntegerLinearProgram.polyhedron
[Reviewed by Dmitrii Pasechnik]
#14418: Frédéric Chapoton: the exterior algebras [Reviewed by Travis
Scrimshaw]
#14423: Volker Braun: python-2.7.4 [Reviewed by Jeroen Demeyer]
#14435: Nathann Cohen: A certificate for is_forest [Reviewed by Frédéric
Chapoton]
#14441: Jeroen Demeyer: Upgrade GCC to 4.7.3 [Reviewed by Jean-Pierre Flori]
#14463: Frédéric Chapoton: cleanup of the file gsl/dft.py [Reviewed by
Travis Scrimshaw]
#14464: Frédéric Chapoton: cleanup of yang baxter graph [Reviewed by
Travis Scrimshaw]
#14466: Volker Braun, Nils Bruin: issue with type in doctests [Reviewed
by Nils Bruin, Volker Braun]
#14472: John Cremona, Jeroen Demeyer: some elliptic curve functions over
number fields fail over relative fields [Reviewed by Jeroen Demeyer,
John Cremona]
#14474: Nathann Cohen: Hypergraph enumeration through Nauty [Reviewed by
Dmitrii Pasechnik]
#14477: R. Andrew Ohana: Graph database query results should be sorted
[Reviewed by Volker Braun, Jeroen Demeyer]
#14479: Volker Braun: Catch CDD errors during polyhedron construction
[Reviewed by Dmitrii Pasechnik]
#14483: Nathann Cohen: Helpful message if GAP fails to load a package
[Reviewed by Dmitrii Pasechnik]
#14486: Volker Braun: 0 == Set([0]) raises error [Reviewed by Nathann Cohen]
#14488: Jeroen Demeyer: Remove notebook stuff from extcode [Reviewed by
Volker Braun]
Merged in sage-5.10.beta2:
#12553: Volker Braun: Add interface for PALP polytope databases
[Reviewed by Dmitrii Pasechnik]
#14055: Jeroen Demeyer, Volker Braun: Fix sage-cleaner [Reviewed by John
Palmieri, Leif Leonhardy, Volker Braun]
#14145: Travis Scrimshaw, Andrew Mathas: Problems with contains for
Tableau, TableauTuples and PartitionTuples [Reviewed by Andrew Mathas,
Travis Scrimshaw]
#14146: Charles Bouillaguet: Warn when creating number fields with
non-monic-integral polynomials [Reviewed by Marco Streng]
#14248: Travis Scrimshaw: Add case sensitive to global options [Reviewed
by Andrew Mathas]
#14283: Nathann Cohen, Dmitrii Pasechnik: M22 and Cameron graph
constructors [Reviewed by Dmitrii Pasechnik]
#14297: Frédéric Chapoton: is_strongly_regular does not handle complete
graphs [Reviewed by Jernej Azarija, Frédéric Chapoton, Nathann Cohen]
#14301: Travis Scrimshaw: Improvement to alternating sign matrices
[Reviewed by Chris Berg]
#14319: Nathann Cohen: Automorphism group with labeled vertices
[Reviewed by Volker Braun]
#14412: Nathann Cohen: Bug in DiGraph.longest_path [Reviewed by Nicolas
M. Thiéry]
#14419: Frédéric Chapoton: cleanup of
sage/quadratic_forms/special_values.py [Reviewed by Travis Scrimshaw]
#14454: Travis Scrimshaw, Anne Schilling: Regular crystals category
[Reviewed by Anne Schilling, Travis Scrimshaw]
#14494: Jean-Baptiste Priez: HG ignore for eclipse project [Reviewed by
Volker Braun]
#14496: Frédéric Chapoton: unify the three implementations of gaussian
q-binomial coefficients [Reviewed by Francis Clarke, Travis Scrimshaw]
#14497: Christian Stump: Universal cyclotomic field fails to convert 0
to QQ [Reviewed by Volker Braun]
#14499: Nathann Cohen: Some cleaup in sage/combinat/design [Reviewed by
Stefan van Zwam]
#14501: David Coudert: Fix memory allocation problems in
data_structures_pyx.pxi [Reviewed by Nathann Cohen]
#14502: David Coudert: Improvements of hyperbolicity procedures
[Reviewed by Nathann Cohen]
#14503: Tomer Bauer: Typos in the reference manual: GAP interface and
Weyl group [Reviewed by Nathann Cohen]
#14514: Nathann Cohen: A constructor for the Brouwer-Haemers graph
[Reviewed by Jernej Azarija]
#14527: Jernej Azarija: chromatic_polynomial - fixed memory leak and
added new test cases [Reviewed by Nathann Cohen]
#14531: Nathann Cohen: Gurobi is not built anymore because of a typo !
[Reviewed by Leif Leonhardy]
#14534: Thomas Feulner: Composition of ring homomorphisms [Reviewed by
Francis Clarke]
#14538: Jeroen Demeyer: Add support for "huge" packages [Reviewed by
Volker Braun]
#14544: Robert Bradshaw: Cython dependency checking broken [Reviewed by
Jeroen Demeyer]
Merged in sage-5.10.beta3:
#2023: Travis Scrimshaw: Latex pictures for Dynkin diagram and misc
improvements to Cartan types [Reviewed by Nicolas M. Thiéry]
#11908: Frédéric Chapoton: Fix tree plotting again [Reviewed by Nathann
Cohen]
#12173: Mike Hansen, Fredrik Johansson, Jean-Pierre Flori: Update FLINT
to 2.3 [Reviewed by John Cremona, Jeroen Demeyer, Burcin Erocal]
#12509: John Cremona: computation of height of point on elliptic curve
over Q(sqrt(5)) is WRONG [Reviewed by Peter Bruin, Chris Wuthrich]
#12973: Emil R. Vaughan, Nathann Cohen: Cannot copy() instances of
GurobiBackend. [Reviewed by Volker Braun]
#13004: Volker Braun: make micro_release doesn't work [Reviewed by Marc
Mezzarobba]
#13225: Alex Csar, Kevin Dilks, Sangwook Kim: Check if lattices are
upper/lower-semimodular and modular [Reviewed by Frédéric Chapoton]
#14217: Ben Hutz: basic iteration functionality for affine and
projective morphisms [Reviewed by Adam Towsley]
#14375: Volker Braun: Indicate escape codes in doctest output [Reviewed
by Jeroen Demeyer, Volker Braun]
#14417: Jeroen Demeyer: Various cleanup of scripts [Reviewed by R.
Andrew Ohana]
#14478: Martin Albrecht, Robert Fitzpatrick, Daniel Cabracas, Florian
Göpfert, Michael Schneider: (Ring-) Learning with Errors Oracles
[Reviewed by Minh Van Nguyen]
#14487: Jeroen Demeyer: lrcalc spkg contains broken symlinks [Reviewed
by Nicolas M. Thiéry]
#14521: Jeroen Demeyer: Fix Sage.app on OS X 10.4 [Reviewed by Michael
Welsh, Karl-Dieter Crisman]
#14528: Jernej Azarija: Additional doctests for the graph module
[Reviewed by Nathann Cohen]
#14533: Tomer Bauer: Add strands with different colors in BraidGroup
plot [Reviewed by Frédéric Chapoton]
#14539: Jeroen Demeyer: Upgrade PARI to 2.5.4 [Reviewed by Jean-Pierre
Flori]
#14554: Scott Mancuso: Fix typo in combinat.py [Reviewed by Nicolas M.
Thiéry]
#14557: Jeroen Demeyer: doctesting framework doesn't properly handle
atexit [Reviewed by R. Andrew Ohana]
#14560: Travis Scrimshaw: Implement hash for Gelfand-Tsetlin patterns
[Reviewed by Chris Berg]
#14562: Nathann Cohen: Steiner Quadruple Systems [Reviewed by Volker Braun]
#14566: Nathann Cohen: Optional parameters for Gurobi [Reviewed by
Volker Braun]
#14569: R. Andrew Ohana: Upgrade to Cython 0.19.1 [Reviewed by Jeroen
Demeyer]
Merged in sage-5.10.beta4:
#4327: Nicolas Borie, Nicolas M. Thiéry: Refactor and extend root
systems plots [Reviewed by Nicolas M. Thiéry, Nicolas Borie, Travis
Scrimshaw]
#12532: Veronica Suaste: plot3d transformations should take symbolic
vectors [Reviewed by Miguel Marco]
#12832: Jeroen Demeyer: Upgrade cvxopt to 1.1.6 [Reviewed by Volker Braun]
#13213: Vincent Delecroix: Comparisons in quadratic number field
[Reviewed by Burcin Erocal, Volker Braun]
#13724: Nicolas M. Thiéry, Jesus Torrado: Improved support for
relabelled Cartan types [Reviewed by Travis Scrimshaw]
#13836: Andrew Fleckenstein: Fix variable dependence in
PiecewisePolynomial [Reviewed by Burcin Erocal]
#13953: Peter Bruin: (non)archimedian_local_height of a torsion points
always gives 0 [Reviewed by Chris Wuthrich]
#14141: Franco Saliola, Avinash Dalal, Anne Schilling: Implementation of
Knutson-Tao puzzles [Reviewed by Allen Knutson, Liz Beazley, Ed Richmond]
#14473: Nathann Cohen: Old deprecation warnings [Reviewed by Travis
Scrimshaw]
#14532: Nathann Cohen: Symplectic graphs [Reviewed by Frédéric Chapoton]
#14570: R. Andrew Ohana: Cythonize Sage library out of tree [Reviewed by
Jeroen Demeyer]
#14576: Nicolas M. Thiéry: Fix side effect in the affine method of
relabelled cartan types [Reviewed by Anne Schilling]
#14578: John Palmieri: SimplicialComplex chain complex composition not
zero [Reviewed by Volker Braun]
#14583: Darij Grinberg: Permutation('()') and Permutation(''), each in
its own way, fail to return the identity in S_0 [Reviewed by Nathann Cohen]
#14584: Alex Ghitza: trivial doc fixes for symmetric functions [Reviewed
by Mike Hansen]
#14593: Jean-Pierre Flori: Typo in source.rst [Reviewed by Jeroen Demeyer]
#14596: Jeroen Demeyer: Make a new optional spkg for pari's databases
[Reviewed by John Cremona]
#14603: Volker Braun: Remove the FLINT include directory from
module_list.py [Reviewed by Nathann Cohen, Leif Leonhardy, Jeroen Demeyer]
#14606: Jeroen Demeyer: Race condition with GAP workspaces [Reviewed by
Volker Braun]
Merged in sage-5.10.beta5:
#5825: Jeroen Demeyer: sage -i $FOO.spkg should abort cleanly when write
permissions are lacking [Reviewed by John Palmieri]
#9890: Nathann Cohen: A proper random_element() method for
PerfectMatchings [Reviewed by Frédéric Chapoton]
#10508: Volker Braun, Jeroen Demeyer, Jean-Pierre Flori: Update ATLAS to
stable version 3.10.1 [Reviewed by Benjamin Jones, Karl-Dieter Crisman,
Dmitrii Pasechnik, Georg Weber, François Bissey, John Palmieri, Volker
Braun]
#11463: Florent Hivert: Add a Sage vs. Python FAQ [Reviewed by Gustavo
de Oliveira, Travis Scrimshaw]
#11539: Eviatar Bach, Nils Bruin: Sage incorrectly interprets factorials
in equations. [Reviewed by Karl-Dieter Crisman]
#12728: Julien Puydt: sage's spkg sources should use correct include
paths instead of having ../../../../whatever everywhere [Reviewed by
Volker Braun, Jeroen Demeyer, Julien Puydt]
#13735: Vít Tuček: Fixing a bug in sage.misc.misc.coeff_repr [Reviewed
by Andrey Novoseltsev]
#13947: Leif Leonhardy: zn_poly segfaults during tuning and tests on OS
X and Cygwin when built on a busy system [Reviewed by Jeroen Demeyer]
#14056: Jernej Azarija: Distance matrix [Reviewed by Nathann Cohen]
#14131: Darij Grinberg: Greene-Kleitman partition of a poset [Reviewed
by Travis Scrimshaw]
#14235: Mike Zabrocki: Implements antipode and counit in new_kschur.py
[Reviewed by Travis Scrimshaw]
#14237: Mike Zabrocki: Implements coproduct, antipode and counit in
k_dual.py [Reviewed by Travis Scrimshaw]
#14281: Punarbasu Purkayastha: sage -advanced doesn't document the
-sagenb option [Reviewed by Julien Puydt]
#14545: Thomas Feulner: Initialization of a graph breaks latex output of
any other object [Reviewed by Nathann Cohen]
#14556: Julien Puydt, Jeroen Demeyer: The maxima spkg has cruft dating
back to days of clisp use [Reviewed by Jeroen Demeyer, Julien Puydt]
#14559: Thierry Monteil: Make sage-banner more pretty [Reviewed by John
Palmieri, Volker Braun]
#14574: Darij Grinberg: Bender-Knuth involutions and standardization of
semistandard Young tableaux [Reviewed by Travis Scrimshaw]
#14601: John Palmieri: table.__repr__() replaces True and False by 1 and
0 [Reviewed by Sébastien Labbé]
#14611: Frédéric Chapoton: cleanup of tiling.py [Reviewed by Nathann Cohen]
#14612: Travis Scrimshaw: Speedup long test in generalized Young walls
[Reviewed by Anne Schilling]
#14616: Nico Van Cleemput: Several typing mistakes in documentation of
independent_set_of_representatives function [Reviewed by Nathann Cohen]
#14617: Jean-Pierre Flori: Update scipy to 0.12 [Reviewed by Volker Braun]
#14621: Tomer Bauer: Bitwise xor documentation in the tutorial and FAQ
[Reviewed by Karl-Dieter Crisman]
#14623: Volker Braun: occasional doctest failure in test_graceful_exit
[Reviewed by Jeroen Demeyer]
#14626: Jeroen Demeyer: Docbuilder hangs if latex fails [Reviewed by
John Palmieri]
#14629: Jeroen Demeyer: Upgrade and clean up sqlite package [Reviewed by
François Bissey]
Merged in sage-5.10.rc0:
#12447: Jeroen Demeyer, John Palmieri: update the file COPYING.txt
[Reviewed by John Palmieri]
#13690: Punarbasu Purkayastha: legend marker 'o' is incorrectly printed
[Reviewed by Nathann Cohen]
#14123: Viviane Pons: Adding new combinatorial maps to binary trees
[Reviewed by Christian Stump]
#14161: Franco Saliola: add a _test_antipode method for Hopf algebras
[Reviewed by Mike Zabrocki]
#14249: Simon King: There should be no need to have _an_element_ to
multiply elements [Reviewed by Travis Scrimshaw]
#14442: Nathann Cohen: Graph.is_circular_planar does not behave as
expected [Reviewed by Nico Van Cleemput]
#14536: Nathann Cohen: Random tournaments, a misnamed method and a
segfault [Reviewed by Frédéric Chapoton]
#14550: Beni Keller: German tutorial for school teachers (mainly aimed
at Gymnasium level) [Reviewed by Paul-Olivier Dehaye]
#14568: Vincent Delecroix: prepend list to lazy_list [Reviewed by Travis
Scrimshaw]
#14575: Jeroen Demeyer: Improve ./sage -t --new [Reviewed by David Roe]
#14577: Chris Wuthrich: Bug in the case S_4 in Galois representations of
elliptic curves [Reviewed by Frédéric Chapoton]
#14587: Martin Albrecht: Gröbner bases via Macaulay2 broken [Reviewed by
Volker Braun]
#14632: Punarbasu Purkayastha: make generic_graph.plot() pass its
options to show [Reviewed by Nathann Cohen]
#14650: Jeroen Demeyer: Clarify in docs that Sage is GPL version 3
[Reviewed by Volker Braun]
Merged in sage-5.10.rc1:
#14302: Chris Berg: Adding combinatorial maps decorators to various
combinatorial classes [Reviewed by Christian Stump]
#14525: Nico Van Cleemput: cliquer does not like the empty graph
[Reviewed by Nathann Cohen]
#14561: Frédéric Chapoton: cleanup of doc in sha_tate.py [Reviewed by
Volker Braun]
#14571: Volker Braun: Improve UTF-8 support in LaTeX documentation
[Reviewed by Dmitrii Pasechnik]
#14638: Gregg Musiker: Fixes a bug in mutation_class (cluster seed)
[Reviewed by Christian Stump]
#14649: Volker Braun: Cython debug symbols and sage --gdb [Reviewed by
Jeroen Demeyer]
#14661: Jeroen Demeyer: Upgrade zlib to 1.2.8 [Reviewed by Volker Braun]
#14662: Jeroen Demeyer: Fix ECL relocation [Reviewed by Volker Braun]
#14673: Frédéric Chapoton: turn crystalographic into crystallographic
[Reviewed by Travis Scrimshaw, Nicolas M. Thiéry]
#14691: Karl-Dieter Crisman: Reference links fix in
schemes/toric/ideal.py [Reviewed by Volker Braun]
Merged in sage-5.10.rc2:
#13245: John Palmieri, Leif Leonhardy: sage --clone: do not rebuild the
entire Sage library, and do not rebuild the docs [Reviewed by John
Palmieri, Travis Scrimshaw, Leif Leonhardy]
#14699: Jean-Pierre Flori, Volker Braun, Jeroen Demeyer: Install ATLAS
header files and cleanup IML spkg [Reviewed by Jean-Pierre Flori]
#14705: Jeroen Demeyer: Misc changes to install guide [Reviewed by
Jean-Pierre Flori]
#14721: Leif Leonhardy: Disable "cythonizing out-of-tree" until
sage-sync-build and sage-clone can deal with that [Reviewed by Travis
Scrimshaw]
Merged in sage-5.10:
#14753: Jeroen Demeyer: Revert ATLAS package [Reviewed by Jeroen Demeyer]
Thierry
Jun 26, 2013, 8:04:22 PM6/26/13
to sage-...@googlegroups.com
Hi,
as for previous versions, the live-USB containing Sage 5.10 can be
downloaded from http://sagedebianlive.metelu.net/
Ciao,
Thierry
> --
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>
as for previous versions, the live-USB containing Sage 5.10 can be
downloaded from http://sagedebianlive.metelu.net/
Ciao,
Thierry
> You received this message because you are subscribed to the Google Groups "sage-devel" group.
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