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bli
27
6/27/18
[rsem-announce] RSEM v1.2.7 has a minor update
Hi everyone, RSEM v1.3.1 is released! - Added --gff3-genes-as-transcripts option for rsem-prepare-
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[rsem-announce] RSEM v1.2.7 has a minor update
Hi everyone, RSEM v1.3.1 is released! - Added --gff3-genes-as-transcripts option for rsem-prepare-
6/27/18
bli
9/7/13
[rsem-announce] RSEM v1.2.7 is released!
Hi all, RSEM v1.2.7 is online now. - 'rsem-find-DE' is replaced by 'rsem-run-ebseq'
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[rsem-announce] RSEM v1.2.7 is released!
Hi all, RSEM v1.2.7 is online now. - 'rsem-find-DE' is replaced by 'rsem-run-ebseq'
9/7/13
Bo Li
7/31/13
[rsem-announce] RSEM v1.2.6 is released!
Hi all, RSEM v1.2.6 is online now. - Install the latest version of EBSeq from Bioconductor and if
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[rsem-announce] RSEM v1.2.6 is released!
Hi all, RSEM v1.2.6 is online now. - Install the latest version of EBSeq from Bioconductor and if
7/31/13
Bo Li
6/26/13
[rsem-announce] RSEM v1.2.5 is released!
Hi all, RSEM v1.2.5 is online now. - Updated EBSeq from v1.1.5 to v1.1.6 - Fixed a bug in 'rsem-
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[rsem-announce] RSEM v1.2.5 is released!
Hi all, RSEM v1.2.5 is online now. - Updated EBSeq from v1.1.5 to v1.1.6 - Fixed a bug in 'rsem-
6/26/13
Bo Li
4/15/13
[rsem-announce] RSEM v1.2.4 is released!
Hi all, RSEM v1.2.4 is online now. - Fixed a bug that leads to poor parallelization performance in
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[rsem-announce] RSEM v1.2.4 is released!
Hi all, RSEM v1.2.4 is online now. - Fixed a bug that leads to poor parallelization performance in
4/15/13
b...@cs.wisc.edu
2/9/13
CSEM v2.4 is released!
Hi all, CSEM v2.4 is online now. - Replaced the Fenwick tree like structure with a linear structure
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CSEM v2.4 is released!
Hi all, CSEM v2.4 is online now. - Replaced the Fenwick tree like structure with a linear structure
2/9/13
b...@cs.wisc.edu
1/8/13
[rsem-announce] RSEM v1.2.3 is released!
Hi all, RSEM v1.2.3 is online now. - Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-
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[rsem-announce] RSEM v1.2.3 is released!
Hi all, RSEM v1.2.3 is online now. - Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-
1/8/13
b...@cs.wisc.edu
1/8/13
[rsem-announce] RSEM v1.2.2 is released!
Hi all, RSEM v1.2.2 is online now. - Updated EBSeq to v1.1.5 - Modified 'rsem-find-DE' to
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[rsem-announce] RSEM v1.2.2 is released!
Hi all, RSEM v1.2.2 is online now. - Updated EBSeq to v1.1.5 - Modified 'rsem-find-DE' to
1/8/13
b...@cs.wisc.edu
11/29/12
[rsem-announce] RSEM v1.2.1 is released!
Hi all, RSEM v1.2.1 is online now. - Added poly(A) tails to 'reference_name.transcripts.fa'
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[rsem-announce] RSEM v1.2.1 is released!
Hi all, RSEM v1.2.1 is online now. - Added poly(A) tails to 'reference_name.transcripts.fa'
11/29/12
b...@cs.wisc.edu
11/29/12
[rsem-announce] RSEM v1.2.0 is released!
Hi all, RSEM v1.2.1 is online now. - Added poly(A) tails to 'reference_name.transcripts.fa'
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[rsem-announce] RSEM v1.2.0 is released!
Hi all, RSEM v1.2.1 is online now. - Added poly(A) tails to 'reference_name.transcripts.fa'
11/29/12
b...@cs.wisc.edu
9/11/12
[rsem-announce] RSEM v1.2.0 is released!
Hi all, RSEM v1.2.0 is online now. - Changed output formats, added FPKM field etc. - Fixed a bug
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[rsem-announce] RSEM v1.2.0 is released!
Hi all, RSEM v1.2.0 is online now. - Changed output formats, added FPKM field etc. - Fixed a bug
9/11/12
b...@cs.wisc.edu
7/2/12
[rsem-announce] RSEM v1.1.21 is released!
Hi all, RSEM v1.1.21 is online now. - Removed optional field "Z0:A:!" in the BAM outputs -
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[rsem-announce] RSEM v1.1.21 is released!
Hi all, RSEM v1.1.21 is online now. - Removed optional field "Z0:A:!" in the BAM outputs -
7/2/12
b...@cs.wisc.edu
7/2/12
[rsem-announce] RSEM v1.1.20 is released!
Hi all, RSEM v1.1.21 is online now. - Removed optional field "Z0:A:!" in the BAM outputs -
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[rsem-announce] RSEM v1.1.20 is released!
Hi all, RSEM v1.1.21 is online now. - Removed optional field "Z0:A:!" in the BAM outputs -
7/2/12
b...@cs.wisc.edu
6/5/12
[rsem-announce] RSEM v1.1.20 is released!
Hi all, RSEM v1.1.20 is online now. - Added an option to set the temporary folder name - Removed
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[rsem-announce] RSEM v1.1.20 is released!
Hi all, RSEM v1.1.20 is online now. - Added an option to set the temporary folder name - Removed
6/5/12
b...@cs.wisc.edu
4/26/12
[rsem-announce] RSEM v1.1.19 is released!
Hi all, RSEM v1.1.19 is online now. - Allowed > 2^31 hits - Added some instructions on how to
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[rsem-announce] RSEM v1.1.19 is released!
Hi all, RSEM v1.1.19 is online now. - Allowed > 2^31 hits - Added some instructions on how to
4/26/12
Bo Li
11
3/11/12
RSEM v1.1.12 is released!
Hi all, There is a bug in GCC (version 4.5.3 or higher) which will make RSEM fail to compile. For
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RSEM v1.1.12 is released!
Hi all, There is a bug in GCC (version 4.5.3 or higher) which will make RSEM fail to compile. For
3/11/12
b...@cs.wisc.edu
1/31/12
[rsem-announce] RSEM v1.1.16 is released!
Hi all, RSEM v1.1.16 is online now. - Added --time option to show time consumed by each phase - Moved
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[rsem-announce] RSEM v1.1.16 is released!
Hi all, RSEM v1.1.16 is online now. - Added --time option to show time consumed by each phase - Moved
1/31/12
b...@cs.wisc.edu
8/25/11
RSEM v1.1.11 is released!
Hi all, RSEM v1.1.11 is online now. A bug related to expected counts calculation is fixed. Allow
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RSEM v1.1.11 is released!
Hi all, RSEM v1.1.11 is online now. A bug related to expected counts calculation is fixed. Allow
8/25/11
b...@cs.wisc.edu
8/10/11
RSEM v1.1.10 is released!
Hi all, RSEM v1.1.10 is online now. Add some user-friendly error messages. You can find the source
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RSEM v1.1.10 is released!
Hi all, RSEM v1.1.10 is online now. Add some user-friendly error messages. You can find the source
8/10/11
Bo Li
6/1/11
RSEM v1.1.9 is released!
Hi all, RSEM v1.1.9 is online now. "rsem-plot-model" is modified. A bug related to
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RSEM v1.1.9 is released!
Hi all, RSEM v1.1.9 is online now. "rsem-plot-model" is modified. A bug related to
6/1/11
b...@cs.wisc.edu
4/18/11
RSEM v1.1.8 is released!
Hi all, RSEM v1.1.8 is online now. Added sanity checks for the user choosed aligner, including if the
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RSEM v1.1.8 is released!
Hi all, RSEM v1.1.8 is online now. Added sanity checks for the user choosed aligner, including if the
4/18/11
Bo Li
4/12/11
RSEM v1.1.7 is released!
Hi all, RSEM v1.1.7 is online now. A bug under transcript set model (ie use transcript set as
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RSEM v1.1.7 is released!
Hi all, RSEM v1.1.7 is online now. A bug under transcript set model (ie use transcript set as
4/12/11
b...@cs.wisc.edu
4/7/11
RSEM v1.1.6 is released!
Hi all, RSEM v1.1.6 is online now. One bug in 'rsem-plot-model' is fixed. A bug related to
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RSEM v1.1.6 is released!
Hi all, RSEM v1.1.6 is online now. One bug in 'rsem-plot-model' is fixed. A bug related to
4/7/11
b...@cs.wisc.edu
3/21/11
RSEM v1.1.5 is available. Several important bugs are fixed, please update!
Hi all, RSEM v1.1.5 is online now (http://deweylab.biostat.wisc.edu/rsem/). Several bugs are fixed.
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RSEM v1.1.5 is available. Several important bugs are fixed, please update!
Hi all, RSEM v1.1.5 is online now (http://deweylab.biostat.wisc.edu/rsem/). Several bugs are fixed.
3/21/11
b...@cs.wisc.edu
2
2/17/11
Announcement: RSEM v1.1.2 is released!
Dear users, In addition, RSEM v1.1.2 supports the newest SAM specification, SAM spec v1.3 now. Best,
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Announcement: RSEM v1.1.2 is released!
Dear users, In addition, RSEM v1.1.2 supports the newest SAM specification, SAM spec v1.3 now. Best,
2/17/11