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Once again: You can't test the MPU alone with System 3-6 games unless you
are using Leon's test ROM. With the stock game ROMs installed even a good,
working MPU will fail in self test when operated without a driver board
attached. These games were designed to work when the MPU/driver were paired
and the self-test requires communication from the driver board back to the
MPU. The odd behavior you saw when the two were separated and the MPU
placed in self-test was actually the correct failure mode as there was no
driver board attached.