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Welcome to this discussion group about r-inla. Please ask your questions here in case you think they will be useful for others, otherwise send them to
help@r-inla.org
. You are of'course free to comment on questions from others as well.
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Alokesh Manna
7:54 AM
Besag copy model
Hi INLA m,embers, I am trying to use a copied model in besag with a fixed hyper parameter and it
unread,
Besag copy model
Hi INLA m,embers, I am trying to use a copied model in besag with a fixed hyper parameter and it
7:54 AM
Alokesh Manna
,
Håvard Rue
4
May 3
Fixed hyperparameter in INLA
the internal scale for precision is log(prec), hence setting initial=a, fixed=TRUE for precision,
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Fixed hyperparameter in INLA
the internal scale for precision is log(prec), hence setting initial=a, fixed=TRUE for precision,
May 3
Charlotte Taelman
,
Thierry Onkelinx
3
May 2
Formula including quadratic terms
Dear Charlotte, Please keep the mailing list in cc. Others might benefit from the conversation. Yes.
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Formula including quadratic terms
Dear Charlotte, Please keep the mailing list in cc. Others might benefit from the conversation. Yes.
May 2
Brian
,
Finn Lindgren
2
May 1
Sampling from the Posterior
From the joint posterior distribution. Finn On Wed, 1 May 2024, 17:49 Brian, <brianmwas33@gmail.
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Sampling from the Posterior
From the joint posterior distribution. Finn On Wed, 1 May 2024, 17:49 Brian, <brianmwas33@gmail.
May 1
Aminath Shausan
,
Elias T. Krainski
2
May 1
knmodels with LCAR prior
Currently, it will add the constraints (as if the main effect has rank deficiency). I've updated
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knmodels with LCAR prior
Currently, it will add the constraints (as if the main effect has rank deficiency). I've updated
May 1
Jeffrey Wu
, …
Håvard Rue
8
May 1
Summary.fitted.values results for an LGCP
you can go into the source code and change it there, but that will not fix the problem... so in short
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Summary.fitted.values results for an LGCP
you can go into the source code and change it there, but that will not fix the problem... so in short
May 1
Alokesh Manna
,
Helpdesk (Haavard Rue)
2
May 1
Editing an INLA graph object
> g="/home/hrue/R/x86_64-redhat-linux-gnu-library/4.3/INLA/demodata/germany.graph" >
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Editing an INLA graph object
> g="/home/hrue/R/x86_64-redhat-linux-gnu-library/4.3/INLA/demodata/germany.graph" >
May 1
Zach Frere
, …
Helpdesk (Haavard Rue)
8
May 1
Fitting Linear Mixed Model for Clustered data
log_jacobian_det <- sum(log(det(jacobian_matrix))) it should be 'abs(det())' in general. I
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Fitting Linear Mixed Model for Clustered data
log_jacobian_det <- sum(log(det(jacobian_matrix))) it should be 'abs(det())' in general. I
May 1
Katherine Adase
, …
INLA help
5
Apr 30
Negative Marginal log-Likelihood- how to improve model?
Okay! Thank you for your help :) On Tue, Apr 30, 2024 at 3:04 AM INLA help <he...@r-inla.org>
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Negative Marginal log-Likelihood- how to improve model?
Okay! Thank you for your help :) On Tue, Apr 30, 2024 at 3:04 AM INLA help <he...@r-inla.org>
Apr 30
Edgar Lanoue
,
Finn Lindgren
12
Apr 30
Multiple likelihood lgcp - tutorial question
O think the issue is that you didn't specify any input to the copy component. That one _also_
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Multiple likelihood lgcp - tutorial question
O think the issue is that you didn't specify any input to the copy component. That one _also_
Apr 30
Felipe Barletta
, …
Helpdesk (Haavard Rue)
5
Apr 29
Joint model
We do not compile with R-4.4 yet. I have linked the 4.4 directory for testing versions to 4.3 builds,
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Joint model
We do not compile with R-4.4 yet. I have linked the 4.4 directory for testing versions to 4.3 builds,
Apr 29
shicx
,
Elias T. Krainski
8
Apr 29
MPredictor == ny
something is missing somewhere but without a reproducible code it is hard to check On Mon, 29 Apr
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MPredictor == ny
something is missing somewhere but without a reproducible code it is hard to check On Mon, 29 Apr
Apr 29
Olivier Supplisson
Apr 29
munmap_chunk(): invalid pointer when enabling Pardiso
Hi, I am trying to use the Pardiso solver with inla() and I came across the following error:
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munmap_chunk(): invalid pointer when enabling Pardiso
Hi, I am trying to use the Pardiso solver with inla() and I came across the following error:
Apr 29
Wen-Hsi Yang
, …
Helpdesk (Haavard Rue)
15
Apr 28
Differences in inference when using different algorithms and different versions of INLA
Hi Haavard, Thank you for your reply and suggestions. Your notification makes sense to me. I will
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Differences in inference when using different algorithms and different versions of INLA
Hi Haavard, Thank you for your reply and suggestions. Your notification makes sense to me. I will
Apr 28
Morgane Declerck
,
Finn Lindgren
2
Apr 28
Plotting inla bru predicted output covering the entire mesh
You appear to have made predictions along the transects only. To predict on the entire domain, you
unread,
Plotting inla bru predicted output covering the entire mesh
You appear to have made predictions along the transects only. To predict on the entire domain, you
Apr 28
Alokesh Manna
,
Helpdesk (Haavard Rue)
2
Apr 28
INLA latent variables more than 15
yes it can be done. I'll send you one private as it use a work-in-progress feature On Sat, 2024-
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INLA latent variables more than 15
yes it can be done. I'll send you one private as it use a work-in-progress feature On Sat, 2024-
Apr 28
Valentina Monte
,
Helpdesk (Haavard Rue)
2
Apr 26
inla function error
Your installation of INLA failed in the sense that it is incomplete. maybe you need to set options(
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inla function error
Your installation of INLA failed in the sense that it is incomplete. maybe you need to set options(
Apr 26
Alizée Geffroy
,
Finn Lindgren
2
Apr 26
Spatial model with observations in inlabru
Hi, the way you defined the components, the X values at the observation locations need to be provided
unread,
Spatial model with observations in inlabru
Hi, the way you defined the components, the X values at the observation locations need to be provided
Apr 26
Brian
,
Helpdesk (Haavard Rue)
6
Apr 26
INLA crash error
I'll need the data/contents of those, or your R-script, so I can rerun it here. On Fri, 2024-04-
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INLA crash error
I'll need the data/contents of those, or your R-script, so I can rerun it here. On Fri, 2024-04-
Apr 26
Helpdesk (Haavard Rue)
Apr 26
Recall Version_24.04.22
We would like to recall Version_24.04.22 as there was a regression which could in some cases
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Recall Version_24.04.22
We would like to recall Version_24.04.22 as there was a regression which could in some cases
Apr 26
Mark Myer
, …
Helpdesk (Haavard Rue)
6
Apr 26
PARDISO License for HPC
there is no need to set anything in the options anymore, just place the license file as ~/panua.lic
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PARDISO License for HPC
there is no need to set anything in the options anymore, just place the license file as ~/panua.lic
Apr 26
MELVIN ESTOLANO
, …
Helpdesk (Haavard Rue)
4
Apr 26
Spatial hurdle model for spatial area data
Thank so much sirs, I'll check t out. Best regards, MELVIN R. ESTOLANO Statistician III Health
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Spatial hurdle model for spatial area data
Thank so much sirs, I'll check t out. Best regards, MELVIN R. ESTOLANO Statistician III Health
Apr 26
dli...@umces.edu
,
Håvard Rue
2
Apr 25
latent z model error
seems like you have done the math wrong, the model is Z %*% z so 'Z' must be nxm matrix,
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latent z model error
seems like you have done the math wrong, the model is Z %*% z so 'Z' must be nxm matrix,
Apr 25
Patrick Brown
Apr 24
macos homebrew arm64
I've got inla working on mac m3 homebrew. 1- install INLA from here https://inla.r-inla-download.
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macos homebrew arm64
I've got inla working on mac m3 homebrew. 1- install INLA from here https://inla.r-inla-download.
Apr 24
Alokesh Manna
,
Helpdesk (Haavard Rue)
2
Apr 24
Mixed effect model with weights
there is a model, 'z' for this purpose, please check inla.doc("^z") On Tue, 2024-04
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Mixed effect model with weights
there is a model, 'z' for this purpose, please check inla.doc("^z") On Tue, 2024-04
Apr 24
Alokesh Manna
, …
INLA help
11
Apr 20
Identifiability issue in inla clarification
Thank you for your answer. On Sat, 20 Apr 2024 at 8:42 AM, INLA help <he...@r-inla.org> wrote: *
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Identifiability issue in inla clarification
Thank you for your answer. On Sat, 20 Apr 2024 at 8:42 AM, INLA help <he...@r-inla.org> wrote: *
Apr 20
Brian
,
Finn Lindgren
3
Apr 19
INLA Mesh Assessment
Thank you. On Friday, April 19, 2024 at 2:24:57 PM UTC+3 Finn Lindgren wrote: Hi, following the inla.
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INLA Mesh Assessment
Thank you. On Friday, April 19, 2024 at 2:24:57 PM UTC+3 Finn Lindgren wrote: Hi, following the inla.
Apr 19
Gregor Gorjanc
, …
Helpdesk (Haavard Rue)
3
Apr 19
What is a practical limit for INLA for large sparse Gaussian models (not IID)?
On Thu, 2024-04-18 at 13:07 -0700, Gregor Gorjanc wrote: > At what scale does one need to think
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What is a practical limit for INLA for large sparse Gaussian models (not IID)?
On Thu, 2024-04-18 at 13:07 -0700, Gregor Gorjanc wrote: > At what scale does one need to think
Apr 19
Sébastien Coube
,
Finn Lindgren
2
Apr 18
I think I got something wrong with nonstationary kappa and tau parametrization
Hi, Please include your actual results, and specific comments about precisely you think is
unread,
I think I got something wrong with nonstationary kappa and tau parametrization
Hi, Please include your actual results, and specific comments about precisely you think is
Apr 18
Guido Fioravanti
,
Finn Lindgren
3
Apr 17
testing model convergence in inlabru
Please link to the website discussion item you posted last week when re-asking the same question; I
unread,
testing model convergence in inlabru
Please link to the website discussion item you posted last week when re-asking the same question; I
Apr 17