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Ilyushenok Ilya
9/5/16
psg_infer_frequencies.py - invalid literal for float()
Hello. I try to run psg_infer_frequencies.py in my laptop with small set of paired-end reads (Ubuntu
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psg_infer_frequencies.py - invalid literal for float()
Hello. I try to run psg_infer_frequencies.py in my laptop with small set of paired-end reads (Ubuntu
9/5/16
GF
,
Colin Dewey
8
12/23/13
psg_prepare_reference.py and psg_infer_frequencies.py errors
Hi GF, Did you identify what the issue was? If there is a better error message we can report it would
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psg_prepare_reference.py and psg_infer_frequencies.py errors
Hi GF, Did you identify what the issue was? If there is a better error message we can report it would
12/23/13
Philip Jonsson
,
Colin Dewey
5
12/2/13
psg_prepare_reference.py - java error
Alright Colin, thanks for the help. On Monday, December 2, 2013 3:02:59 PM UTC-6, Colin Dewey wrote:
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psg_prepare_reference.py - java error
Alright Colin, thanks for the help. On Monday, December 2, 2013 3:02:59 PM UTC-6, Colin Dewey wrote:
12/2/13
cnd...@gmail.com
12/1/13
Announcing PSGInfer v1.2.1
The PSGInfer team is proud to announce the release of v1.2.1 of the software. The release includes a
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Announcing PSGInfer v1.2.1
The PSGInfer team is proud to announce the release of v1.2.1 of the software. The release includes a
12/1/13
Colin Dewey
10/25/13
Announcing PSGInfer v1.2.0
The PSGInfer team is proud to announce the release of v1.2.0 of the software. The release
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Announcing PSGInfer v1.2.0
The PSGInfer team is proud to announce the release of v1.2.0 of the software. The release
10/25/13
Zhenhua Wu
, …
Colin Dewey
3
10/12/13
psg reports zero reads for most genes
Hi Hyunmin, Thanks for documenting these issues. We are working on a new version that should address
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psg reports zero reads for most genes
Hi Hyunmin, Thanks for documenting these issues. We are working on a new version that should address
10/12/13
Zhenhua Wu
8/30/13
psg output using UCSC known gene as gtf input
Hi, I used UCSC known gene as gtf input, the output file: gene.results.txt is like this: gene_id
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psg output using UCSC known gene as gtf input
Hi, I used UCSC known gene as gtf input, the output file: gene.results.txt is like this: gene_id
8/30/13
Zhenhua Wu
2
8/30/13
psg_prepare_reference failed
The problem seems to be due to the number of core used. I reduced the number of core to 3, it works
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psg_prepare_reference failed
The problem seems to be due to the number of core used. I reduced the number of core to 3, it works
8/30/13
Zhenhua Wu
4
8/22/13
error running psg_prepare_reference
Now I got another error after it runs for 2 hours: ... (many lines that are not shown here) java -cp
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error running psg_prepare_reference
Now I got another error after it runs for 2 hours: ... (many lines that are not shown here) java -cp
8/22/13
Zhenhua Wu
8/21/13
De novo alternative spicing
For PSG, it requires a known PSG model constructed from a known transcripts annotation file such as a
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De novo alternative spicing
For PSG, it requires a known PSG model constructed from a known transcripts annotation file such as a
8/21/13