The trick I've been using on Mac OS X is to print to a PDF file
(Print... > Save as PDF...). Because Protovis uses SVG, this preserves
the vector graphics and you can embed it in a paper without losing
quality. You may need to use another program to crop the PDF, and be
sure to turn off the extra headers and footers.
Another option is to extract the SVG source from the generated
visualization. Unfortunately, you can't just right-click on an SVG
image and save it, which would be a great browser feature. But you can
get the source of a visualization `vis` as:
vis.scene[0].canvas.innerHTML
You could alert this, or use console.log, or set the value of a
textarea to it. Then you can copy-and-paste this into a .svg text
file, which should let you import it into another program.
Mike