This version includes the addition of a metagenomic gene finder,
multiple FASTA handling as part of the main program (no additional
Perl scripts needed), and a much more detailed output (putting
information into note and attributes fields, as well as into the
translation/DNA outputs).
2.0 has passed all our internal testing, but there may still be bugs
lurking. If you find anything, let us know here or at the
code.google.com site (or email me directly at the address in the
README file).
The paper (describing v1.20) is also out provisionally at
http://www.biomedcentral.com/1471-2105/11/119. Once the full version
is out, I'll post here again with details.