Description:
Help and general discussions for the end users of POY, a phylogenetic analysis software package. POY is developed at the American Museum of Natural History by Andres Varon, Nicholas Lucaroni, and Lin Hong. Documentation and further support by Louise Crowley, Megan Cevasco, and John Denton.
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POY compilation error
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Hello all,
I'm trying to install POY on my cluster, and I'm getting the
following error:
"
./libpoycside.a(newkkonen.o): In function `get_delta':
/nfs/16/osu6617/poy_5.0.1.alph a/src/_build/newkkonen.c:244: undefined
reference to `cm_get_min_non0_cost'
File "caml_startup", line 1, characters 0-1:... more »
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Jackknife problem
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Hello POY group
I'm using POY 4.1.3 Development build on an 8 processor debian-based
machine with the flat interface & mpi, so I'm working entirely from
scripts. I haven't been able to get jackknife supports other than 1.0
for all nodes for tcm other than the default 1,2. If I run the example... more »
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POY5.0.1 alpha release
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POY users, We are please to announce the release of the POY5.0.1 alpha. This is mainly a big fix release. Windows and OSX Binaries, source, and documentation are available at [link]. The emphasis of this release is functionality, with efficiency a major goal... more »
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POY5-alpha release
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POY users, We are please to announce the initial alpha release of POY5. Many new features have been added and others improved including maximum likelihood, chromosomal, and genomic analysis. Windows and OSX Binaries, source, and documentation are available at [link].... more »
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Bremer support
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Hi,
I'm new to poy4. To analyze my phenotype-genotype data, I customized
tutor scripts from poy4 manual. Bootstrap and Jackknife work great as
does the first half of Bemer support script. However, the second part
of Bremer lists the same error number at each node of a pdf tree file
for all 124 nodes. Is there a work around or do I download a... more »
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large alphabet
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Hi there,
I would need to enable the 'large alphabet' option for dynamic
homology character but I do not know how to proceed...
For your information, I'm working on a personal computer with a
Windows interface.
Thanks for your help!
Fred
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Poy plug in interfering with aligned fasta reports
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Hello I have a poy script that I have been running successfully. It
generates a number of reports including an aligned fasta file. However
when I call poy with the supramap plug like so:
mpiexec poy -plugin ~/bin/supramap.cmxs poy_script.txt
The script will create a blank file instead of a file that has the... more »
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Request for comments for a POY web service.
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Hello, I am a computer programmer in Dr. Janies' Lab. I am in the
process of creating a web service for POY that we plan on using
internally for some of our applications. We also think it will be
useful to as expose the web service externally so other developers can
create there own applications. We would like to know what features of... more »
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