plinkseq-users

Can you not convert to bgen and then to VCF? On Wednesday 6 March 2024 at 21:33:39 UTC Sofia Sehli

Same question and hope to be answered. Thanks. Shicheng On Wednesday, August 25, 2021 at 7:29:58 AM

Yeah. I was just making sure that it hasn't moved to any other URL. Thanks for your reply.

Hi, I am running into the same issue. Did you find any solution? Thanks, Ravi On Thursday, December

This seems to be happening again. Could you fix it? All links to resource files are broken. Thank you

I had this same issue, you should specify the full path to the refdb and seqdb for instance pseq proj

Hi All, i have a question about a plinkseq warning eg "plinkseq warning: **serious**

Randomly, plinkseq 10 stops adding the prefix. pseq proj v-assoc --phenotype phe1 > test.tab ...

Known individuals from .vcf file doesn't seem to get updated. I guess we have to edit the

Hello group, I have tried to perform --hardy on my dataset, but now I want only a part of my

It seems like db files of hg38 were not provided in the homepage, so maybe you need to download it

Hello dear plink users, I'm a student that has recently been introduced to plink for the first

Hi I installed standard binary installation for Linux. "pseq help" works but "pseq .

We are using PSEQ to analyse rare variants at a gene-based level. I like the interface and the output

Hello, I am running gene based association test (version plinkseq-0.10) for a case- control study of

Hi I am searching the tool, too Did you convert the format?? then let me know how to do 2015년 6월 27일

Hi, I load a vcf file output from minimac3 with format GT:DS:GP and I'd like to run glm based on

Hello, I have just installed plinkseq-0.10 (I have tried the linux executables as well as building

Hi, This is what worked for me at the end: change the last part of that line (starting from awk '

Hello everybody I'm a new user of Plinkseq and I am trying to analyze a compressed vcf with

Hello, I am an engineer at Google interested in using your project. If you are comfortable with

Dear All, I am using your pseq to analyze some PLINK format data (bed/bim/fam). I got many warnings

I was wondering if its is possible to run --homozyg analisys using PLINK Seq, like in normal PLINK.

Greetings (again), I've, figuratively, been around the world looking for plinkseq and Rplinkseq

Yes, I haven't heard back since my original post. I moved on, unfortunately :/ On Thu, Jan 12,

Hi Esthers, Did you define refseq group by yourself? Could you advise how you did this? Thank you.

Hi, I am trying to upload 1kG wget ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20110521/ALL.

Hi again, an update for others who might run into the same problem: I think you still need to edit

I am getting the same error. and I contacted the author, They do not respond!!!!!!!!! This software

Hello, I am interested in using SKAT that is incorporated within PLINK/SEQ for gene based analysis. I