pathway-commons-help

Thank you for this information. On Fri, Oct 4, 2024 at 12:57 PM Gary Bader <gary....@utoronto.ca

I have been facing difficulties in accessing the Pathway Common website for the past few days.

I had not seen that, but that is absolutely perfect! Thank you very much! On Friday, August 16, 2024

Hi Pathway Commons, I am hoping to use two separate lists of genes associated with comorbid

Great, I will follow up offline. Thanks! -Rohit On Friday, July 12, 2024 at 11:43:36 AM UTC-7 Gary

Hi - we are unfortunately having more than one type of issues with our servers and internet

Thanks for letting us know. We'll check it out. Best, Gary On 9 May 2024, at 20:01, Mira Welner

Hello, When I try to use the BioPax web service REST API it returns an error (see below). Thank you,

Hi everyone - quick reminder of the biofactoid call today at 4 ET. Gary

Yeah, sorry, I didn't notice that Google held our messages in moderation, so they came through

Hi Maggie - we are actively working on an update. Most pathway databases don't update any more,

Hello, I want to ask about Pathway Commons labeling technique. In the picture result that i get, the

The service is a bit new (released Nov 2022) and the quality of the layouts is always a concern

Hi, I'm looking for sample sparql queries to better understand pc. A meaningful example is really

Thanks Matt! We'll check it out and let you know if we have any comments. Gary On 17 Feb 2023, at

**Note that I am not a member of PC** > - What are the differences between All, Detailed, and

Hi, I am trying to get all the pathway information from the PathwayCommons12.All.hgnc.txt file. I am

Hi Alessandro - please use version 12, the latest PC release. My apologies but the directory "

Thank you for your quick reply. Oh I see, I will switch to v12 then. I can see that I now have

Hello! I try to launch a query on the PC endpoint for 2 weeks without success. The endpoint is down:

Thank you for helping. On Sat, 3 Sep 2022 at 12:14 AM Jeffrey Wong <jvw...@gmail.com> wrote:

Hi all, I'm trying to import the full pathwaycommons owl into my local GraphDB server but it

Ahhh ok right, thanks! I'll have a look at that one. Thanks for your help! Abel On Friday,

hi, That seems to work very well, thanks very much for your help. Joe On Monday, June 21, 2021 at 3:

Glad to hear that it's useful! We've also got a web service ro run the SIF graph queries

Consider the Geo Dataset 'Stromal molecular signatures of breast and prostate cancer' (Link:

Thanks a lot On Sunday, March 21, 2021 at 8:52:43 PM UTC+5:30 jvw...@gmail.com wrote: Does this

Hi Julian, At that time, we processed the Reactome v69, 28-May-2019, only 'Homo_sapiens.owl'

Thanks for this information Ted. Unfortunately we have no active grant/funding to support maintenance

Thanks for looking into this, Igor! Yeah the issues you mentioned with rdf are definitely there. In