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SourceForge.net
7/18/17
Reconfirm subscription to obo-format mailing list
Hi, This is a reminder to reconfirm your subscriptions to these mailing lists: obo-format If you are
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Reconfirm subscription to obo-format mailing list
Hi, This is a reminder to reconfirm your subscriptions to these mailing lists: obo-format If you are
7/18/17
SourceForge.net
6/27/17
Important Account Information - Reconfirm Mailing List Subscriptions
Hi, Thanks for being a SourceForge user. Our records indicate that you are subscribed to the
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Important Account Information - Reconfirm Mailing List Subscriptions
Hi, Thanks for being a SourceForge user. Our records indicate that you are subscribed to the
6/27/17
J. Michael Cherry PhD
8/18/16
[Obo-format] Call for Papers: 10th International Society for Biocuration meeting, DATABASE Journal Virtual Issue
Dear Colleagues, The International Biocuration Conference is a unique event for biocurators and
unread,
[Obo-format] Call for Papers: 10th International Society for Biocuration meeting, DATABASE Journal Virtual Issue
Dear Colleagues, The International Biocuration Conference is a unique event for biocurators and
8/18/16
Chris Mungall
6/8/15
[Obo-format] oboformat project moved from googlecode to github
This is the new home: https://github.com/owlcollab/oboformat I took the opportunity to update the
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[Obo-format] oboformat project moved from googlecode to github
This is the new home: https://github.com/owlcollab/oboformat I took the opportunity to update the
6/8/15
Steffen Neumann
,
Chris Mungall
3
3/4/15
[Obo-format] Problem converting from OWL to OBO
Dear Chris, thanks for the prompt answer, owltools did the job! Yours, Steffen On Mi, 2015-03-04 at
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[Obo-format] Problem converting from OWL to OBO
Dear Chris, thanks for the prompt answer, owltools did the job! Yours, Steffen On Mi, 2015-03-04 at
3/4/15
Erick Antezana
,
Chris Mungall
3
10/7/14
[Obo-format] broken link: serializer conventions
Fixed, thanks. On 7 Oct 2014, at 1:54, Erick Antezana wrote: > I was looking at the branched, old
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[Obo-format] broken link: serializer conventions
Fixed, thanks. On 7 Oct 2014, at 1:54, Erick Antezana wrote: > I was looking at the branched, old
10/7/14
Chris Mungall
9/22/14
[Obo-format] Some context: obo-format support in Protege and OWLAPI 3.5.x
Some context on the last email - a lot of discussion has happened on the owlapi list and trackers. I
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[Obo-format] Some context: obo-format support in Protege and OWLAPI 3.5.x
Some context on the last email - a lot of discussion has happened on the owlapi list and trackers. I
9/22/14
Chris Mungall
9/22/14
[Obo-format] Opinions? Skipping validation for writing obo-format documents
https://github.com/owlcs/owlapi/issues/290 In owltools, it's always been possible to skip
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[Obo-format] Opinions? Skipping validation for writing obo-format documents
https://github.com/owlcs/owlapi/issues/290 In owltools, it's always been possible to skip
9/22/14
Erick Antezana
,
Chris Mungall
3
8/29/14
[Obo-format] Broken link: OBOF --> GO site
This is the URL for the OBO-Format guide: http://oboformat.googlecode.com/svn/trunk/doc/GO.format.obo
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[Obo-format] Broken link: OBOF --> GO site
This is the URL for the OBO-Format guide: http://oboformat.googlecode.com/svn/trunk/doc/GO.format.obo
8/29/14
Chris Mungall
,
Ignazio Palmisano
2
11/27/13
[Obo-format] Fwd: [OWLAPI-developer] 3.4.9 release
Just a note for the subscribers of this list who are not also on the OWLAPI mailing list: my
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[Obo-format] Fwd: [OWLAPI-developer] 3.4.9 release
Just a note for the subscribers of this list who are not also on the OWLAPI mailing list: my
11/27/13
Chris Mungall
11/4/13
[Obo-format] New non-normative section with recommendations for imports
http://oboformat.googlecode.com/svn/trunk/doc/obo-syntax.html#8.4 basic summary - you are strongly
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[Obo-format] New non-normative section with recommendations for imports
http://oboformat.googlecode.com/svn/trunk/doc/obo-syntax.html#8.4 basic summary - you are strongly
11/4/13
Erick Antezana
,
Chris Mungall
2
11/4/13
[Obo-format] owl-axioms?
See http://oboformat.googlecode.com/svn/trunk/doc/obo-syntax.html#5.0.4 OE supports this in that it
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[Obo-format] owl-axioms?
See http://oboformat.googlecode.com/svn/trunk/doc/obo-syntax.html#5.0.4 OE supports this in that it
11/4/13
Ignazio Palmisano
,
Chris Mungall
4
10/15/13
[Obo-format] oboformat Maven release and availability
The googlecode repo says new BSD, but we can license under the Apache if that makes it easier for you
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[Obo-format] oboformat Maven release and availability
The googlecode repo says new BSD, but we can license under the Apache if that makes it easier for you
10/15/13
ipalmisan...@gmail.com
10/10/13
oboformat Maven release and availability
Hi guys, I'm in the process of integrating the obo format parser and renderer with the OWL API
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oboformat Maven release and availability
Hi guys, I'm in the process of integrating the obo format parser and renderer with the OWL API
10/10/13
Alan Ruttenberg
, …
Chris Mungall
12
2/27/13
[Obo-format] On the ugliness of IAO metadata properties in the OWL->OBO translation, and proposal to ameliorate this
On Feb 26, 2013, at 7:59 AM, Alan Ruttenberg wrote: Do I recall correctly that parsers are supposed
unread,
[Obo-format] On the ugliness of IAO metadata properties in the OWL->OBO translation, and proposal to ameliorate this
On Feb 26, 2013, at 7:59 AM, Alan Ruttenberg wrote: Do I recall correctly that parsers are supposed
2/27/13
Erick Antezana
, …
Chris Mungall
18
11/12/12
[Obo-format] request for new tags: modified_by and modification_date
Thanks for adding this Erick. Will this also handle property_value tags in the ontology header? For
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[Obo-format] request for new tags: modified_by and modification_date
Thanks for adding this Erick. Will this also handle property_value tags in the ontology header? For
11/12/12
Mike Cherry
10/19/12
[Obo-format] Call for Papers, Biocuration 2013, Cambridge UK, April 7-10, 2013
Dear Colleagues, The International Biocuration Conference is a unique event for curators and
unread,
[Obo-format] Call for Papers, Biocuration 2013, Cambridge UK, April 7-10, 2013
Dear Colleagues, The International Biocuration Conference is a unique event for curators and
10/19/12
Chris Mungall
7/16/12
[Obo-format] allow property_value tags in ontology headers
I propose a minor addition the current draft that will allow us to capture a range of ontology
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[Obo-format] allow property_value tags in ontology headers
I propose a minor addition the current draft that will allow us to capture a range of ontology
7/16/12
Savas
,
Chris Mungall
4
2/15/12
[Obo-format] add xml data to obo format
Hi Savs, It' still not clear what you mean by store xml data - do you want to just encode a big
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[Obo-format] add xml data to obo format
Hi Savs, It' still not clear what you mean by store xml data - do you want to just encode a big
2/15/12
Savas
,
Chris Mungall
2
2/14/12
[Obo-format] Obo format Instance
http://purl.obolibrary.org/obo/oboformat/spec.html For the syntax see #3.5, and the mapping to OWL,
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[Obo-format] Obo format Instance
http://purl.obolibrary.org/obo/oboformat/spec.html For the syntax see #3.5, and the mapping to OWL,
2/14/12
David Osumi-Sutherland
, …
Melanie Courtot
4
1/23/12
[Obo-format] reviewed_by tag
Hi, I am wondering if by review you mean some sort of endorsement, or if you just mean somebody who
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[Obo-format] reviewed_by tag
Hi, I am wondering if by review you mean some sort of endorsement, or if you just mean somebody who
1/23/12
Chris Mungall
12/14/11
[Obo-format] [developers] oboformat source code reorganized
Just a heads up for any software developers using the oboformat.jar or the oboformat source: We'
unread,
[Obo-format] [developers] oboformat source code reorganized
Just a heads up for any software developers using the oboformat.jar or the oboformat source: We'
12/14/11
Chris Mungall
12/14/11
[Obo-format] [admin] issue tracker emails re-routed
Subscribers to this list will no longer be bothered by the emails auto-sent from the googlecode
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[Obo-format] [admin] issue tracker emails re-routed
Subscribers to this list will no longer be bothered by the emails auto-sent from the googlecode
12/14/11
obof...@googlecode.com
12/14/11
[Obo-format] Issue 62 in oboformat: Specification scetion 2.3
Status: New Owner: ---- Labels: Type-Defect Priority-Medium New issue 62 by mcour...@gmail.com:
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[Obo-format] Issue 62 in oboformat: Specification scetion 2.3
Status: New Owner: ---- Labels: Type-Defect Priority-Medium New issue 62 by mcour...@gmail.com:
12/14/11
obof...@googlecode.com
12/14/11
[Obo-format] Issue 61 in oboformat: Specification - section 2.2
Status: New Owner: ---- Labels: Type-Defect Priority-Medium New issue 61 by mcour...@gmail.com:
unread,
[Obo-format] Issue 61 in oboformat: Specification - section 2.2
Status: New Owner: ---- Labels: Type-Defect Priority-Medium New issue 61 by mcour...@gmail.com:
12/14/11
David Osumi-Sutherland
, …
Alan Ruttenberg
5
12/14/11
[Obo-format] xrefs to MeSH
On 14 Dec 2011, at 14/Dec/2011 14:53:13, Alan Ruttenberg wrote: > On Wed, Dec 14, 2011 at 8:17 AM,
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[Obo-format] xrefs to MeSH
On 14 Dec 2011, at 14/Dec/2011 14:53:13, Alan Ruttenberg wrote: > On Wed, Dec 14, 2011 at 8:17 AM,
12/14/11
obof...@googlecode.com
3
12/13/11
[Obo-format] Issue 60 in oboformat: Specification - section 2.1
Comment #2 on issue 60 by mcour...@gmail.com: Specification - section 2.1 http://code.google.com/p/
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[Obo-format] Issue 60 in oboformat: Specification - section 2.1
Comment #2 on issue 60 by mcour...@gmail.com: Specification - section 2.1 http://code.google.com/p/
12/13/11
Chris Mungall
11/29/11
[Obo-format] Request for comments on obof1.4 specification
We're requesting comments on the editors draft of the obof1.4 spec: http://purl.obolibrary.org/
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[Obo-format] Request for comments on obof1.4 specification
We're requesting comments on the editors draft of the obof1.4 spec: http://purl.obolibrary.org/
11/29/11
Hilmar Lapp
,
Chris Mungall
4
11/21/11
[Obo-format] ontology tag duplicated in 1.4 documentation
On Nov 21, 2011, at 2:57 PM, Hilmar Lapp wrote: > > On Nov 21, 2011, at 5:50 PM, Chris Mungall
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[Obo-format] ontology tag duplicated in 1.4 documentation
On Nov 21, 2011, at 2:57 PM, Hilmar Lapp wrote: > > On Nov 21, 2011, at 5:50 PM, Chris Mungall
11/21/11
Hilmar Lapp
,
Chris Mungall
2
11/21/11
[Obo-format] exposing terms of reuse in an interoperable way
I would suggest first solving the general case issue by asking on the IAO list for the correct way to
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[Obo-format] exposing terms of reuse in an interoperable way
I would suggest first solving the general case issue by asking on the IAO list for the correct way to
11/21/11