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[ANN] tawny-owl 0.11
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I thought to announce this here, as my library was partly motivated by
OBI development! Apologies if it is not of interest.
I'm pleased to announce the release of tawny-owl 0.11. What is it?
==========
This package allows users to construct OWL ontologies in a fully programmatic
environment, namely Clojure. This means the user can take advantage of... more »
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Teleconferencing for Philly Workshop
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All, We can use our WebEx setup again for the Philly workshop next week (the same system we use for the weekly calls). Please find the connection information below. Best, Bjoern Topic: OBI Philly workshop ...Time: 6:00 am, Pacific Daylight Time (San Francisco, GMT-07:00) Meeting Number: 629 961 391... more »
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Assigning IDs with the new build tool
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Hi everyone,
I added code to the new build tool for assigning IDs. It works like Jie's previous code, using a counter and looking for the first unused ID in OBI's ID space. OBI developers who are comfortable with command-line tools should be able to run it themselves -- after making changes in Protégé and just before committing to SVN. (Making a backup of your obi.owl first is highly recommended!)... more »
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OBI Developer Call for May 20, 2013
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Hi everyone,
I'm chairing the call on Monday. We have quite a number of items to discuss:
1. Matt has a deadline, and wants to finish the discussion of CLO-OBI alignment:
- [link]
2. We should discuss the email from Susanna-Assunta Sansone of Nature Publishing Group:... more »
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Fwd: bio-ontologies manuscript, v. 5
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Forgot that I am not a member on my gmail account, so resending from my
iPlant address.
------------------------------ ------------------------
Ramona L. Walls, Ph.D.
Scientific Analyst
The iPlant Collaborative
Thomas J. Keating Bioresearch Building
1657 East Helen St
Tucson, AZ 85721
tel: 520.626.1489... more »
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Data item - discussion points due to terminological differences
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To help single out those discussion points reg. data item that might be due
to terminological differences, I'd like to check whether what I understood
from today's call is correct:
iao:data items are to be understood are the output of measurements only.
Neither predictions nor specifications yield iao:data items, i.e. neither... more »
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call notes
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Limited number of people on the call: Chris, Carlo, Asijah, James, Randi, Bjoern (as expected with Euro-holliday and some cancellations) - BFO 2.0 transition: There is a draft version of a 'subset of BFO2 release + RO relations' available at [link] . Ideally we should be able to plug this into OBI instead of the current unsanctioned 'BFO-ruttenberg' release without any needs for remodeling. James is currently reviewing.... more »
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See