Hi Chris, Alan,
'DNA residue methylation' sounds like a process to me, appending it with
'status' is probably more inline with a quality.
Alternately, we could possibly play with the notion of "methylated
nucleobase residue" located_in 'deoxyribonucleic acids'.
We could also be more specific about the type of output data by
specifying the position of the methylated nucleobase residue.
Cheers
Philippe
Chris Stoeckert wrote:
> Alan,
> The output of MeDIP-Seq is sequence data on DNA fragments containing methylated residues so how about:
> has_specified_output some ('sequence data'
> 'is about' some primary structure of DNA macromolecule' (inheres_in some 'deoxyribonucleic acids (has_quality DNA residue methylation'))
> <if this is the way to go theres a separate discussion point on domain of inheres_in>
> Chris
> On Jun 28, 2010, at 1:42 PM, Alan Ruttenberg wrote:
>> Changing primary structure of macromolecule to GDC made the following
>> unsatisfiable, but I think exposes a true error.
>> The definition:
>> has_specified_output some
>> ('measurement datum'
>> and ('is about' some
>> ('primary structure of DNA macromolecule'
>> and 'DNA residue methylation')))
>> has the conjunction ('primary structure of DNA macromolecule' and
>> 'DNA residue methylation')
>> Which should be empty - these were distinct qualities - just no
>> disjoint asserted. I'm changing it to.
>> has_specified_output some
>> ('measurement datum'
>> and ('is about' some 'primary structure of DNA macromolecule')
>> and ('is about' some 'DNA residue methylation'))
>> However comments on what it should be are welcome.
>> -Alan
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