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balhoff
,
Chris Mungall
3
6/4/10
proposed changes to inheritable_link view
Hi Chris, Thanks for the reply - I'm a bit slow responding because something is off with my
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proposed changes to inheritable_link view
Hi Chris, Thanks for the reply - I'm a bit slow responding because something is off with my
6/4/10
balhoff
,
Hilmar Lapp
2
5/26/10
test
I think I am - the archives should prove it. -hilmar On May 25, 2010, at 9:01 PM, balhoff wrote: >
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test
I think I am - the archives should prove it. -hilmar On May 25, 2010, at 9:01 PM, balhoff wrote: >
5/26/10
Hilmar Lapp
,
Chris Mungall
3
8/9/09
Re: [Phenoscape] Dealing with "absence of entities" in phenotype representations
Cartik's analysis is largely correct and is why we recommend use of relational qualities to
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Re: [Phenoscape] Dealing with "absence of entities" in phenotype representations
Cartik's analysis is largely correct and is why we recommend use of relational qualities to
8/9/09
Cartik Kothari
,
Chris Mungall
2
8/7/09
Re: [Obo-svn-commit] SF.net SVN: obo:[2790] OBDAPI/trunk/scripts/phenoscape-obd-reasoner.pl
You could just define a horn rule as a SQL view and pass this to the reasoner using the --view option
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Re: [Obo-svn-commit] SF.net SVN: obo:[2790] OBDAPI/trunk/scripts/phenoscape-obd-reasoner.pl
You could just define a horn rule as a SQL view and pass this to the reasoner using the --view option
8/7/09
Cartik
, …
Chris Mungall
5
7/24/09
Scalability issues with the OBD reasoner
Thanks Cartik! As it happens I just switched to 8.4 for development and I too noticed problems with
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Scalability issues with the OBD reasoner
Thanks Cartik! As it happens I just switched to 8.4 for development and I too noticed problems with
7/24/09
Cartik
7/23/09
Database connection pooling on Phenoscape
Hi, I implemented a very basic connection management technique for the data services on the
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Database connection pooling on Phenoscape
Hi, I implemented a very basic connection management technique for the data services on the
7/23/09
Cartik
,
Chris Mungall
2
6/24/09
Representing Counts of Entities in Phenotypes
Yet another way to do it is to use cardinality restrictions, as in OWL. OBO also allows this, but the
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Representing Counts of Entities in Phenotypes
Yet another way to do it is to use cardinality restrictions, as in OWL. OBO also allows this, but the
6/24/09
Cartik
, …
Chris Mungall
3
6/23/09
Reflexive is-a links for TTO terms of metatype 'I'
On Jun 23, 2009, at 4:15 PM, Cartik wrote: > > Hi Chris, > > I found out that reflexive
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Reflexive is-a links for TTO terms of metatype 'I'
On Jun 23, 2009, at 4:15 PM, Cartik wrote: > > Hi Chris, > > I found out that reflexive
6/23/09
car...@nescent.org
,
Chris Mungall
2
5/28/09
Missing source IDs for TAO terms
Hi Cartik I would first of all write a JUnit test that replicates this. You can create a small obo
unread,
Missing source IDs for TAO terms
Hi Cartik I would first of all write a JUnit test that replicates this. You can create a small obo
5/28/09
Chris Mungall
,
car...@nescent.org
2
5/28/09
Fwd: [Obo-svn-commit] SF.net SVN: obo:[2543] OBDAPI/trunk
Chris, It does not seem so. oboInOwl:inSubset has the value 't' for 'is_metadata',
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Fwd: [Obo-svn-commit] SF.net SVN: obo:[2543] OBDAPI/trunk
Chris, It does not seem so. oboInOwl:inSubset has the value 't' for 'is_metadata',
5/28/09
Hilmar Lapp
,
Chris Mungall
2
5/1/09
obdapi dependencies and headless problem
I think the dependency on oboedit can be removed. bbop has some swing code unfortunately, but I didn
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obdapi dependencies and headless problem
I think the dependency on oboedit can be removed. bbop has some swing code unfortunately, but I didn
5/1/09
Hilmar Lapp
,
Chris Mungall
2
5/1/09
OBD API documentation is outdated
Regenerated & published Here's the steps: ant apidocs make publish (requires password) Yes,
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OBD API documentation is outdated
Regenerated & published Here's the steps: ant apidocs make publish (requires password) Yes,
5/1/09
Hilmar Lapp
5/1/09
code review of obd-ws
FYI, we did a code review of the obd-ws sub-project under obd. You may have seen a number of commits
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code review of obd-ws
FYI, we did a code review of the obd-ws sub-project under obd. You may have seen a number of commits
5/1/09
Hilmar Lapp
,
Chris Mungall
3
5/1/09
Post-compositional descriptions
On May 1, 2009, at 2:47 PM, Chris Mungall wrote: > Or, at the API level you should be able to do
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Post-compositional descriptions
On May 1, 2009, at 2:47 PM, Chris Mungall wrote: > Or, at the API level you should be able to do
5/1/09
car...@nescent.org
, …
Hilmar Lapp
3
4/30/09
Missing source ids with TTO terms
I think so. I posted a ticket, Jon our sysadmin should be in touch with you. -hilmar On Apr 30, 2009,
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Missing source ids with TTO terms
I think so. I posted a ticket, Jon our sysadmin should be in touch with you. -hilmar On Apr 30, 2009,
4/30/09
Hilmar Lapp
, …
Jim Balhoff
4
2/16/09
Bigdata
I think the paper Chris attached makes it clear how different the OWL framework is from how
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Bigdata
I think the paper Chris attached makes it clear how different the OWL framework is from how
2/16/09
Chris Mungall
2/2/09
OBD Reasoner & relation chains
Hi Hilmar - answering on the list: > http://phenoscape.org/wiki/OBD_Reasoner Very impressive docs!
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OBD Reasoner & relation chains
Hi Hilmar - answering on the list: > http://phenoscape.org/wiki/OBD_Reasoner Very impressive docs!
2/2/09
car...@nescent.org
,
Chris Mungall
2
1/26/09
Access modifier for SqlSelectClauseImpl constructor
That's fine, thanks for the update! On Jan 26, 2009, at 11:00 AM, car...@nescent.org wrote: >
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Access modifier for SqlSelectClauseImpl constructor
That's fine, thanks for the update! On Jan 26, 2009, at 11:00 AM, car...@nescent.org wrote: >
1/26/09
Chris Mungall
2
1/9/09
Re: Disease Phenotypes
On Jan 2, 2009, at 11:01 AM, Sarah Maynard wrote: > Hi Chris, > > I hope you had a great
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Re: Disease Phenotypes
On Jan 2, 2009, at 11:01 AM, Sarah Maynard wrote: > Hi Chris, > > I hope you had a great
1/9/09
Chris Mungall
11/15/08
getStatementsForEQCombination
Did you forget to check something in? I may refactor this into a separate wrapper/utility class. The
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getStatementsForEQCombination
Did you forget to check something in? I may refactor this into a separate wrapper/utility class. The
11/15/08
Chris Mungall
11/12/08
Re: Committing to BBOP project
added to bbop On Nov 12, 2008, at 12:15 AM, Cartik R. Kothari wrote: > Hi Chris, > > Today I
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Re: Committing to BBOP project
added to bbop On Nov 12, 2008, at 12:15 AM, Cartik R. Kothari wrote: > Hi Chris, > > Today I
11/12/08
car...@nescent.org
9/28/08
Distinguishing extinct taxa
Hi, I spoke to Peter Midford, our TTO curator at the Data Jamboree in South Dakota. He needs
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Distinguishing extinct taxa
Hi, I spoke to Peter Midford, our TTO curator at the Data Jamboree in South Dakota. He needs
9/28/08
car...@nescent.org
,
Chris Mungall
4
9/25/08
Looking for Taxa that exhibit specific Entity Quality combinations in OBD
On Sep 25, 2008, at 3:15 PM, car...@nescent.org wrote: > > Chris. > > Given a statement
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Looking for Taxa that exhibit specific Entity Quality combinations in OBD
On Sep 25, 2008, at 3:15 PM, car...@nescent.org wrote: > > Chris. > > Given a statement
9/25/08
car...@nescent.org
, …
Hilmar Lapp
10
9/23/08
TAO and PATO concepts missing labels in Node table
Hi, I had to deal some more permission issues today. Eventually I managed to load the ontologies and
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TAO and PATO concepts missing labels in Node table
Hi, I had to deal some more permission issues today. Eventually I managed to load the ontologies and
9/23/08
Chris Mungall
9/23/08
Re: [Obo-phenotype] Chado compatible Schema for Pato
Hi Jeff The database is called OBD, The Open Biomedical Ontologies Database. It's developed in
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Re: [Obo-phenotype] Chado compatible Schema for Pato
Hi Jeff The database is called OBD, The Open Biomedical Ontologies Database. It's developed in
9/23/08
Chris Mungall
3
9/19/08
Re: post-comps and compositional descriptions
Yep, I filled in your method We could probably do with more convenience methods for building CDs,
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Re: post-comps and compositional descriptions
Yep, I filled in your method We could probably do with more convenience methods for building CDs,
9/19/08
Chris Mungall
,
Hilmar Lapp
3
9/18/08
Populating an OBD database from scratch
On Sep 18, 2008, at 7:34 PM, Hilmar Lapp wrote: > > > On Sep 18, 2008, at 3:24 PM, Chris
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Populating an OBD database from scratch
On Sep 18, 2008, at 7:34 PM, Hilmar Lapp wrote: > > > On Sep 18, 2008, at 3:24 PM, Chris
9/18/08
Chris Mungall
9/18/08
test
test
unread,
test
test
9/18/08
Chris Mungall
9/18/08
test2
test2
unread,
test2
test2
9/18/08