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Chris Mungall
, …
Mihail Bota
5
11/3/14
Avian Brain Regions
Hi Maryann, I see the page is deleted, and the Mesopallium_intermediomediale page is updated with
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Avian Brain Regions
Hi Maryann, I see the page is deleted, and the Mesopallium_intermediomediale page is updated with
11/3/14
Trish Whetzel
, …
anita bandrowski
8
8/12/14
Format of Id value in Neurolex for ontology term pages
Great! Thanks Trish. On Mon, Aug 11, 2014 at 5:54 PM, Trish Whetzel <plwh...@gmail.com> wrote
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Format of Id value in Neurolex for ontology term pages
Great! Thanks Trish. On Mon, Aug 11, 2014 at 5:54 PM, Trish Whetzel <plwh...@gmail.com> wrote
8/12/14
anita bandrowski
, …
Trish Whetzel
3
8/6/14
neurolex ID resolver service
Thanks for the note. I also don't recall complaining about URI resolution in NeuroLex, only
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neurolex ID resolver service
Thanks for the note. I also don't recall complaining about URI resolution in NeuroLex, only
8/6/14
Chris Mungall
, …
Maryann Martone
8
8/6/14
Brodmann area 4
I just saw this now. Part of the confusion is historical, as we imported the terms from NeuroNames
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Brodmann area 4
I just saw this now. Part of the confusion is historical, as we imported the terms from NeuroNames
8/6/14
Chris Mungall
, …
Trish Whetzel
5
7/24/14
Missing connections in linked data representation
OK, we'll look into this further. Trish On Jul 24, 2014 11:18 AM, "Chris Mungall" <
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Missing connections in linked data representation
OK, we'll look into this further. Trish On Jul 24, 2014 11:18 AM, "Chris Mungall" <
7/24/14
Nolan Nichols
, …
anita bandrowski
13
7/2/14
Duplicate DICOM Terms found
When it was first uploaded we used the off the shelf uploader extension from SMW. Zaid can comment on
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Duplicate DICOM Terms found
When it was first uploaded we used the off the shelf uploader extension from SMW. Zaid can comment on
7/2/14
Stephen Larson
3/4/14
Re: NeuroLex questions
Hi Rick, Good questions. Comments below: On Mon, Mar 3, 2014 at 3:15 PM, Rick Gerkin <rgerkin@
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Re: NeuroLex questions
Hi Rick, Good questions. Comments below: On Mon, Mar 3, 2014 at 3:15 PM, Rick Gerkin <rgerkin@
3/4/14
anita bandrowski
,
Shreejoy Tripathy
5
2/18/14
Re: Question about NeuroLex URI resolver for Neuron Types
Will do. Zaid just wrote some code to fix the resource branch, so this should be straightforward. On
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Re: Question about NeuroLex URI resolver for Neuron Types
Will do. Zaid just wrote some code to fix the resource branch, so this should be straightforward. On
2/18/14
Sine Zambach
, …
Helen Parkinson
4
1/23/14
Using Neurolex through R
Hi ontocat's from my group, I have passed this thread onto the personnel involved, also copied
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Using Neurolex through R
Hi ontocat's from my group, I have passed this thread onto the personnel involved, also copied
1/23/14
Chris Mungall
, …
Nolan Nichols
5
1/23/14
Concept pages
+1 for deletion in this case... i too found it a bit confusing until stumbling across the same page
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Concept pages
+1 for deletion in this case... i too found it a bit confusing until stumbling across the same page
1/23/14
Stephen Larson
, …
Chris Mungall
7
1/14/14
Re: Neurolex question
On Mon, Jan 13, 2014 at 6:54 PM, Maryann Martone <mar...@ncmir.ucsd.edu> wrote: Hi Chris: The
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Re: Neurolex question
On Mon, Jan 13, 2014 at 6:54 PM, Maryann Martone <mar...@ncmir.ucsd.edu> wrote: Hi Chris: The
1/14/14
Iker Huerga
,
Stephen Larson
2
1/13/14
SPARQL endpoint
Hi Iker, Fuseki sits on top of Jena which had a more complete implementation of SPARQL 1.1 (property
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SPARQL endpoint
Hi Iker, Fuseki sits on top of Jena which had a more complete implementation of SPARQL 1.1 (property
1/13/14
Stephen Larson
1/13/14
Re: NeuroLex question...
Hi Padraig, Thanks for asking! I expect that there is someone on the list (cc'ed) who can help
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Re: NeuroLex question...
Hi Padraig, Thanks for asking! I expect that there is someone on the list (cc'ed) who can help
1/13/14
anita bandrowski
, …
Mihail Bota
3
12/2/13
Re: NeuroLex help
Hello, As discussed previously with Maryann and today with Anita & Stephen, the basal ganglia (BG
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Re: NeuroLex help
Hello, As discussed previously with Maryann and today with Anita & Stephen, the basal ganglia (BG
12/2/13
Mihail Bota
11/19/13
Major BAMS update
We are happy to announce a major BAMS update: 1. Data. more than 4000 connections reports collated
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Major BAMS update
We are happy to announce a major BAMS update: 1. Data. more than 4000 connections reports collated
11/19/13
Mihail Bota
11/11/13
BAMS Demo tomorrow
We will demo both BAMS and BAMS2 at this SfN meeting, tomorrow morning (Tuesday 12th), from 11AM to
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BAMS Demo tomorrow
We will demo both BAMS and BAMS2 at this SfN meeting, tomorrow morning (Tuesday 12th), from 11AM to
11/11/13
anita bandrowski
, …
Stephen Larson
5
11/4/13
Re: Marmoset atlas and Cross-species query
It is a moderately complex query that will take some thought. I've been helping a student through
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Re: Marmoset atlas and Cross-species query
It is a moderately complex query that will take some thought. I've been helping a student through
11/4/13
Trish Whetzel
, …
anita bandrowski
13
10/16/13
Multiple Neurolex pages for GO terms
added you as a watcher. On Wed, Oct 16, 2013 at 1:21 PM, Trish Whetzel <plwh...@gmail.com>
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Multiple Neurolex pages for GO terms
added you as a watcher. On Wed, Oct 16, 2013 at 1:21 PM, Trish Whetzel <plwh...@gmail.com>
10/16/13
Stephen Larson
2
9/23/13
Re: Crawling all resoruce pages in neurolex
Check this screenshot. First page doesn't have all the results. On Mon, Sep 23, 2013 at 2:40 PM,
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Re: Crawling all resoruce pages in neurolex
Check this screenshot. First page doesn't have all the results. On Mon, Sep 23, 2013 at 2:40 PM,
9/23/13
Mihail Bota
9/4/13
BAMS update
Apologies for any cross-postings... We are happy to release the new, improved, and intuitive
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BAMS update
Apologies for any cross-postings... We are happy to release the new, improved, and intuitive
9/4/13
Trish Whetzel
, …
Maryann Martone
6
8/29/13
Namespaces are missing in example queries
Good idea Trish. You should be able to edit the Wiki to feature it as you think is appropriate. On
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Namespaces are missing in example queries
Good idea Trish. You should be able to edit the Wiki to feature it as you think is appropriate. On
8/29/13
Sine Zambach
, …
Finn Årup Nielsen
5
8/28/13
Neurolex as a simple list
Dear Sine, It is usually possible to query MediaWikis via the API, but you need to iterate over pages
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Neurolex as a simple list
Dear Sine, It is usually possible to query MediaWikis via the API, but you need to iterate over pages
8/28/13
Trish Whetzel
, …
Stephen Larson
5
8/27/13
Identifying changes from NeuroLex in the SPARQL endpoint
The MediaWiki API may also be useful for this: http://www.mediawiki.org/wiki/API:Properties#Revisions
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Identifying changes from NeuroLex in the SPARQL endpoint
The MediaWiki API may also be useful for this: http://www.mediawiki.org/wiki/API:Properties#Revisions
8/27/13
Michel Audette
, …
Stephen Larson
10
8/2/13
Integration of Neurolex xml descriptions into tree & searchable database: any recommended tools?
You can retrieve the list of available properties from the SPARQL endpoint itself. I've added a
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Integration of Neurolex xml descriptions into tree & searchable database: any recommended tools?
You can retrieve the list of available properties from the SPARQL endpoint itself. I've added a
8/2/13
Stephen Larson
2
7/31/13
Re: Comparing neurolex against an ontology
Glad you are finding the RDF dump useful. No translation of that kind has been done -- would be
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Re: Comparing neurolex against an ontology
Glad you are finding the RDF dump useful. No translation of that kind has been done -- would be
7/31/13
Stephen Larson
4/29/13
Re: NeuroLex vertebrate neurons
Looks like some recent edits to the query blanked it out. I've gone ahead and reverted the page -
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Re: NeuroLex vertebrate neurons
Looks like some recent edits to the query blanked it out. I've gone ahead and reverted the page -
4/29/13
curtis neveu
, …
anita bandrowski
3
3/15/13
Creating a neuron page
Hi Stephen, I gave him admin rights. Best, anita On Fri, Mar 15, 2013 at 1:17 PM, Stephen Larson <
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Creating a neuron page
Hi Stephen, I gave him admin rights. Best, anita On Fri, Mar 15, 2013 at 1:17 PM, Stephen Larson <
3/15/13
anita bandrowski
,
Jonathan Cachat
2
2/26/13
Help define the action potential please.
https://twitter.com/neuinfo http://www.linkedin.com/groupItem?view=&gid=131689&type=
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Help define the action potential please.
https://twitter.com/neuinfo http://www.linkedin.com/groupItem?view=&gid=131689&type=
2/26/13
Mihail Bota
,
anita bandrowski
4
1/30/13
BAMS Update
Hi Mihai, I would love to have this as an excel table, just send it to me personally. The version of
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BAMS Update
Hi Mihai, I would love to have this as an excel table, just send it to me personally. The version of
1/30/13
Stephen Larson
,
Jonathan Cachat
3
11/16/12
NeuroLex spam protections
Yes -- we use ReCaptcha (http://www.google.com/recaptcha). On Fri, Nov 16, 2012 at 4:32 PM, Jonathan
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NeuroLex spam protections
Yes -- we use ReCaptcha (http://www.google.com/recaptcha). On Fri, Nov 16, 2012 at 4:32 PM, Jonathan
11/16/12