Real use-case of biological data modeled as a graph with Neo4j

[Pablo Pareja]

Hi everyone,

I just published a new post in Bio4j blog including a graph schema describing the domain model of the DB and I thought that some of you might be interested.

http://blog.bio4j.com/2012/05/new-bio4j-general-domain-model-schema-available/  

For those who don't know yet what Bio4j is, it basically is a graph DB implemented in Neo4j for the integration of biological Big Data.

Please don't hesitate to provide any kind of feedback or questions.

Cheers,

Pablo

--
Pablo Pareja Tobes 

My site     http://about.me/pablopareja

LinkedIn    http://www.linkedin.com/in/pabloparejatobes

Twitter       http://www.twitter.com/pablopareja

Creator of Bio4j --> http://www.bio4j.com

http://www.ohnosequences.com

[Javier de la Rosa]

Wow! You are doing an amazing work. I really like the Bio4jExplorer.
Are you using EC2 through REST, and still getting those good times? i
need a deep read on your blog posts.

Regards-


PD: We are thinking about adding support to private instances based on
EC2 at sylvadb.com. Feel free to check it out :D

--
Javier de la Rosa
http://versae.es

[Pablo Pareja]

Hey, thanks!

Bio4jExplorer tool is currently deployed with a Jetty Server in an EC2 instance, the data itself for the domain model is stored in AWS SimpleDB and the communication between client and server is made through HTTP POST/GET requests, Servlets, and XML.

You can check this blog post:

http://blog.bio4j.com/2012/03/bio4jexplorer-new-features-and-design/

or this one as well:

http://blog.bio4j.com/2011/10/bio4jexplorer-familiarize-yourself-with-bio4j-nodes-and-relationships/

The latter is older but has extra information regarding implementation details.

Let me know if you have any other questions ;)

Cheers,

Pablo