mosaik-aligner

Hi I would like to align exome dataset (PE reads,30 gb x 2) against hg38.fa . We have a server with 1

Hello, We have been using MOSAIK2 for several years for genotyping of polygeneic gene families like

Hi, I have a plant genome (of vitis) that contain 500 million bases, and I need to do reference-

I apologize in advance if my question is so trivial ... Basically, for a given sample, I have a set

Should any one else be looking for a fully IUPAC ambiguity short read / oligonucleotide aligner and

Hi Wan-Ping, I wanted to use Mosaik to do the alignment for the PacBio reads. I'm exited to have

Does this distribution not include the ANN files? The only thing in the tar seems to be the four

Dear Wan-Ping and Mosaik users. I am working on a quite repeated plant genome with 150bp paired-end

assembler (from 1.x versions) seems to choke upon forward slashes, is it a char encoding problem? or

Hi Sven, If you're looking for the files, then they should be in src/networkFile. If you're

Hi Carmen, You are right that each read would appear only once in the bam. The one in the bam is the

Thanks Wan-Ping. I think I might have a way to get it. I am using bwa bwasw hard-clipping which will

Hi! When will you be releasing the documentation for MOSAIK 2.1? If MosaikSort/MosaikText aren't

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