I guess you're talking about FCS?
You should deploy clients by using Group Policy and WSUS:
This is a good start point:
Deploying Client Security
http://technet.microsoft.com/en-us/library/bb404255.aspx
Deploying Client Security to the client computers
http://technet.microsoft.com/en-us/library/bb404232.aspx
Deploying manually to each client computer
http://technet.microsoft.com/en-us/library/bb404279.aspx
Regards,
Dieter
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Dieter Rauscher
MVP Forefront
Website: http://www.msisafaq.de
Blog: http://msmvps.com/rauscher/
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