Fwd: MIAPA through the MIBBI mill

[Arlin Stoltzfus]

Here is Chris's mock-up of the MIAPA strawman draft.  

Arlin

Begin forwarded message:

From: Chris Taylor <chrisf...@ntlworld.com>

Date: October 18, 2011 10:17:28 AM EDT

To: Jim Leebens-Mack <jleebe...@plantbio.uga.edu>, Hilmar Lapp <hl...@nescent.org>, Arlin Stoltzfus <ar...@umd.edu>

Subject: MIAPA through the MIBBI mill

Hi,

Sorry for not getting back to you last night Jim. Anyway I believe this
zip fits the bill:
http://mibbi.sourceforge.net/foundry/temp/MIAPA_through_MIBBI.zip

All the content is doable via MIBBI stuff in a short amount of time
(like minutes). There's another version of Pedro that I use to edit the
XML behind it all (not sent -- happy to though). Please send this on as
much as you like.

So, we have MIAPA in:

ISAcreator (find and run isacreator.jar)
Pedro (find and run run_pedro.bat)

HTML table and list
Mediawiki table and list
tab-del (and a quickly-formatted xls of that)
XML
XSD

That's everything I can do for MIAPA. Within the wider context there is
more to discuss (note, for example, that I have reused some MIBBI
modules -- visible as hyperlinks to their foundry pages in this old
slightly broken version
http://wwwdev.ebi.ac.uk/micheckout/checkout/html?output-type=view_as_html_table&accessions=MIAPA)

Speak anon. Do please let me know when you'd like me around on Skype. I
have a couple of things to do over the evening, but will be around 90%.

Cheers, Chris.


On 17/10/2011 23:58, Jim Leebens-Mack wrote:

Hi Chris,

Do you have a nice on-line demo for your isa tool? I would like to play

with it tonight.

-Jim

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Jim Leebens-Mack

Department of Plant Biology

University of Georgia

Athens, GA 30602-7271

Phone: 706-583-5573

Fax: 706-542-1805

email: jleebe...@plantbio.uga.edu <mailto:jleebe...@plantbio.uga.edu>

url: http://www.plantbio.uga.edu/~jleebensmack/JLMmain.html

=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

-------

Arlin Stoltzfus (ar...@umd.edu)

Fellow, IBBR; Adj. Assoc. Prof., UMCP; Research Biologist, NIST

IBBR, 9600 Gudelsky Drive, Rockville, MD

tel: 240 314 6208; web: www.molevol.org