itksnap-users Google Group

Exceptions running ITK-Snap modified for liver injury segmentation

vrcord...@gmail.com (Víctor Rodrigo) — Thu, 24 Jul 2008 09:48:50 UT

Hi.

In the Applied BioEngineering Group of the " Universidad Politecnica
de Madrid" we are working to add a semi-automatic tool for 3D liver
injury segmentation into ITK-Snap. We have achieved an early version
of the tool that sometimes works but other throws an exception.

Following, I put the code added to UserInterfaceLogic.cxx for if you

Re: [itksnap-users:229] conversion of Analyze to GIPL in linux command line

pyushkev...@gmail.com (Paul Yushkevich) — Thu, 03 Jul 2008 16:41:12 UT

Hi,
With ITK ([link]) you can easily code something up that would convert
between these formats.
Paul

conversion Analyze to GIPL format in linux

ws...@kangwon.ac.kr — Thu, 03 Jul 2008 08:39:52 UT

I'd like to convert Analyze to GIPL format in linux command prompt
without the GUI of SNAP.
Is it possible and how can I do it?

Woo-Suk, Tae
Chuncheon, Korea

conversion of Analyze to GIPL in linux command line

ws...@kangwon.ac.kr — Thu, 03 Jul 2008 08:37:27 UT

Hi!

How can I convert analyze to GIPL format in linux command line without
the GUI of SNAP?

compilation in Ubuntu 8.04

gpagn...@gmail.com (gpagnoni) — Tue, 24 Jun 2008 21:26:24 UT

Hello,

I am trying to compile ITK-SNAP under Ubuntu 8.04, by running ./
getsnap.sh. The compilation halts with the following messages (I
uncommented the line "set -x -e" in getsnap.sh):

......
+ get_itksnap
+ cd /home/mmsanch/Desktop/Inbox/it ksnap_build/itksnap
+ echo 'Checking out ITK-SNAP (Release HEAD) from CVS'

itk-snap 1.6.0 problem in winxp

moti.frei...@gmail.com (Moti Freiman) — Tue, 24 Jun 2008 17:13:12 UT

Hi All,
I've downloaded the latest version of itk snap (1.6.0) as a windows
binary for installation on my laptop (lenovo R61 with nvidia graphics
card).
The installation was o.k. but when i started the program it crashed
(before loading an image).
I've no such problems with the previous version.

Re: [itksnap-users:225] How can I read 3D Varian data set (32bit real)?

stueh...@mpi-cbg.de (Jan Stühmer) — Mon, 23 Jun 2008 15:44:25 UT

Hello,
itksnap has a bug in RawIOGenerator<TRaw>::CreateRa wImageIO()
This method is called when reading raw image data.
I'd guess that it's also this bug that causes ItkSnap to shut down in
your case.
Some time ago I posted a quick workaround for this bug.
You would have to download the sourcecode and change the file

How can I read 3D Varian data set (32bit real)?

sakaiko...@yahoo.co.jp (COZY) — Mon, 23 Jun 2008 14:23:31 UT

Hi folks,

I have trouble to read 128*128*128 32 bit real data which produced
Varian MR scanner
(with 744 bit header).

I tried to read this data by SNAP, but the SNAP always shut down
suddenly.

Does anyone have solution? or have same experience?

COZY@MD

ITK SNAP for 64 bits windows

ajiang.aji...@gmail.com (Yi) — Thu, 12 Jun 2008 15:51:55 UT

Hello, I have a big image (1024x512x512). It seems ITK SNAP can not
handle it (always give error message and quit). Is there a 64 bits ITK
SNAP for windows?

Thanks a lot!

visualize Points set

amatigi...@googlemail.com — Thu, 12 Jun 2008 13:25:31 UT

Good morning,
I've a segmented dataset I visualize useing ITK snap.
I would love to import a set of points and visualize them. the set of
point is in VTK format.
Kind regards.
Giancarlo Amati

Re: [itksnap-users:221] 3D fetal ultrasound segmentation

bello.juancar...@gmail.com (JUAN CARLOS BELLO MUÑOZ) — Thu, 05 Jun 2008 22:56:09 UT

As far as we have tried in the past it is not posible
any other suggestion would be more than welcome
2008/6/5 jabs <jabenavi...@gmail.com>:

3D fetal ultrasound segmentation

jabenavi...@gmail.com (jabs) — Thu, 05 Jun 2008 16:53:56 UT

Hi there

I am a newbie and would like to know if it is possible to perform a
manual or automatic segmentation from fetal 3D ultrasound using ITK-
SNAP. I am actually working at the Mexican National Institute of
Perinatology and we are working on volume calculation from fetal 3D
files acquired from General Electric Voluson Expert ultrasound

Re: Display RGB DICOM Series

chrrossman...@web.de (ChrRossmanith) — Tue, 03 Jun 2008 07:34:48 UT

Hi again after a long while,

my problem is solved :-) Finally the "trouble" Windows machine
displayed the RGB images as expected. I've just copied all images
belonging to the RGB series into a separate directory and that already
solved the problem. So it seemed to be a "trouble directory" maybe

SNAP hosted on NITRC: please vote!

pyushkev...@gmail.com (Paul Yushkevich) — Mon, 02 Jun 2008 17:53:48 UT

Dear ITK-SNAP users,
We would like to ask you to take just a few moments of your time to
review ITK-SNAP at the NIH Neuroimaging Informatics Tools and
Resources Clearinghouse (NITRC) website. Your reviews and ratings will
be extremely valuable both to assess your needs and to help direct
potential users towards choosing ITK-SNAP. As you know, ITK-SNAP is

Manual delineation after segmenting 3d

randall.newm...@gmail.com (Newmark) — Mon, 19 May 2008 19:21:58 UT

Hi Paul,

I was hoping you could help me with this. I was using the segment 3d
tool and I wanted to use the preprocessed image to manually delineate
thalamic nuclei. The "intensity regions" images seemed to provide
reliable markers for identifying the medial dorsal nucleus and
pulvinar, but I could not figure out how to use the polygon tool with