How do I setup a Sequest search within the IPP?
	Hi - I'm not new to MS and proteomics...but I'm relatively computer dumb and command prompts scare me, which is why the IPP is interesting to me over the TPP (which I have had so many permission errors during setup that I'm overly frustrated). So thankfully, the IPP install went 100x faster than the TPP setup. YEAH!... more » By Ruby  - Apr 17 2008 - 2 new of 2 messages

	NSP bin
	What is the role of NSP bin in the protein prophet results, how the value is assigned to it and how that value should be interpreted for concluding protien identifications. I could understand the importance of NSP (number of sibling peptides) in assigning a correct protein identification. My question is what is the need... more » By research user  - Mar 14 2008 - 1 new of 1 message

	TPP and VISTA
	I have bought a new PC with windows vista, I am trying to install TPP on it but so far I am unsuccessfull, please guide. I have TPP running smoothly on my laptop with windows xp. Do i need to download an apache server other than what comes with TPP. I tried checking all the setting on both of my computers ( environment... more » By spctools2008@googlemail.c om  - Feb 29 2008 - 2 new of 2 messages

IPP installation

I have installed ipp on my computer with windows xp, as the website says that its a 30 days free. I have also installed apache 2.2 which is working fine. But i am not able to open up the webinterface as it says http 404 not found. i am not getting what must be going wrong. tpp petunia is working fine on my system. please if you have some... more » By spctools2008@googlemail.c om  - Feb 18 2008 - 11 new of 11 messages

	IPP protein prophet
	Hi, I seem to have a problem with running protein prophet after analyzing search results with peptide prophet (which does work). When I try to view protein prophet results I always get the message "c:/Inetpub/wwwroot/ISB/data/i nteract-prot.xml (file not found: not created or deleted?) " and the command box says:... more » By geert  - Jul 9 2007 - 4 new of 4 messages

IPP and VISTA (It works!)

Hello all I thought i can put in a brief note to let you know that IPP now runs on my Vista Ultimate. Initially I had a lot of trouble getting it to work and after some massive help offered via this Group we were able to figure out that the problem was with apache. -The Apache which came with the installation, for some reason, did not... more » By newscientist_au  - May 13 2007 - 2 new of 2 messages

	Help wit IPP
	Hi What is a .param file and where can I get it from Also does anyone have the problem when using Mascot as the database. I cant seem to acces the server. Thanks in advance By ak_kingkong  - May 9 2007 - 2 new of 2 messages

	IPP Installation problem
	HI I tried installing the IPP on my PC (Vista ulimate) but the link does not open "[link]" The Browser says that the page cannot be loaded an dthat it could not find localhost. During setting up after the reboot there was an error message.. it checked for perl and it was fine but for teh second test i think for... more » By newscientist_au  - May 6 2007 - 6 new of 6 messages

	Quantitation
	Hi i want to know whether all TPP upgrades will be included in IPP and i am interested in quantitation proteomics, ASAPRatio and XPRESS. How much streamlined or userfriendly is your interphase? thanks kash By kash  - Oct 26 2006 - 7 new of 7 messages

	Using unimod files for modifications
	Hi there, How do you go about using unimod files allow conversion of pepXML files that contain modifications not contained in the IPP's default list? You mention this as a feature but I'm not sure whether it does this automatically or whether you have to manually provide it with a file? Thanks Ry... more » By Ry Tweedie-Cullen  - Oct 24 2006 - 4 new of 4 messages