MIREOT session - Friday August 9th - 9 am PST
Melanie Courtot
Following several requests during ICBO, we decided to have a dedicated
MIREOT meeting. This will take place Friday August 7th, at 9 am PST.
We will be using Centra (thanks Gilberto :) ); please read the
connection instructions below, and if you are using it for the first
time allow a bit of time for set up. Centra will allow for screen
sharing, making for a more interactive session.
Connection
- go to ncicb.centra.com/
- do *not* try to log in, instead click on "Attend a meeting"
- on the next screen, enter the event ID: OBIVowWK
- on the next screen, enter your email address
- click "Attend"
- You may be asked to accept a certificate - just say yes
Note: the session is currently open, so you should be able to log in
right now using the above instructions. Any problem let me know.
Agenda:
- the idea behind MIREOT (Melanie/Alan - 20 minutes)
- OntoFox demonstration (Oliver/Allen - 40 minutes)
Please have a look at the background material referenced below, and
let us know if you have any specific questions you would like us to
address.
Thanks,
Melanie
Background material:
A paper on importing, specifically, was presented at ICBO:
http://purl.obolibrary.org/obo/obi/repository/trunk/docs/papers/MIREOT_ICBO2009/mireot.pdf
The slides presented at ICBO are
http://purl.obolibrary.org/obo/obi/repository/trunk/docs/papers/MIREOT_ICBO2009/MIREOT_ICBO2009.ppt
The specific file we use for OBI to define the imported term is
http://purl.obolibrary.org/obo/obi/repository/trunk/src/ontology/branches/external.owl
The templates for the SPARQL CONSTRUCT queries we use to pull in
information are at
http://purl.obolibrary.org/obo/obi/repository/trunk/src/tools/build/external-templates.txt
And the code that processes them:
http://purl.obolibrary.org/obo/obi/repository/trunk/src/tools/build/create-external-derived.lisp
A web-based implementation of the above process developed by Oliver
He's group at http://ontofox.hegroup.org/
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Mélanie Courtot
TFL- BCCRC
675 West 10th Avenue
Vancouver, BC
V5Z 1L3, Canada
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Mélanie Courtot
TFL- BCCRC
675 West 10th Avenue
Vancouver, BC
V5Z 1L3, Canada