Main stream aquaponic setups can get pricey depending on size but looking at how to make it cost effective, efficient, and automated.
I'm not trying to turn this in to a gardening club think of having a system that was automated that you could have meat, vegetables, clean air, and fuel for your car.
I would want to try and focus more on experimenting with balancing Ph level autonomously with house hold items that would not hurt the plants or the fish maybe baking soda and lemon juice.
I think an aquaponic system is more then just a garden or a fish tank in my eye's it is more of nature hacking creating a self sustaining ecosystem that gives you food and energy to be able to be "off grid".
Things i would look at for automation
Ph levels, particle levels, harvesting, and bio fuel generation.
I am looking at part of it gardening, part of it aquaculturing, and mostly automation making every aspect happen so no one has to maintenance it except maybe give it a bag of lye for bio fuel conversion.
Also maybe figuring out how to make a continues flow system with out any pumps.
I have no experience making one but i have read a good bit and have some ideas i am working towards building one though.