Bill
USB power is going to be 5V. What is the battery supply voltage? You can use a diode or two to make sure that the power supplies don't fight each other. It's easy to show in a drawing, but hard to describe in e-mail. Is there any way you can post a quick sketch? I'd probably be thinking of putting in a diode so that you can run off either power source and plug/unplug the USB at will.
If that isn't confusing enough, depending on your battery technology, a battery under 5V might be OK with being tied directly to 5V in a "charging" configuration, but that depends on the battery chemistry and the total impedance in what effectively becomes the charging circuit. Usually, you need a current limiter, at minimum. Fancy batteries like LiPo's need a charge controller.
-dave
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Bill W.